Levi Waldron

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Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
Igor JurisicaVerified email at ai.utoronto.ca
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Ludwig GeistlingerCenter for Computational Biomedicine, Harvard Medical SchoolVerified email at hms.harvard.edu
Markus RiesterNovartis Institutes for Biomedical ResearchVerified email at novartis.com
Michael BirrerProfessor Medicine HMSVerified email at partners.org
Marcel M. Ramos PérezCUNY Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Fei-Fei LiuUniversity Health NetworkVerified email at rmp.uhn.ca
Denis NashCUNY Institute for Implementation Science in Population Health, CUNY School of Public Health, CUNYVerified email at sph.cuny.edu
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public HealthVerified email at hsph.harvard.edu
Patricia Pintor dos ReisSão Paulo State University (UNESP)Verified email at unesp.br
Jennifer Beam DowdProfessor of Demography & Population Health, University of OxfordVerified email at demography.ox.ac.uk
Sean DavisUniversity of ColoradoVerified email at cuanschutz.edu
Aedin CulhaneUniversity of Limerick School of MedicineVerified email at ul.ie
X C MorganHarvard T.H. Chan School of Public Health. Former Sr. Lecturer of Microbiology, Otago UniversityVerified email at hsph.harvard.edu
Lucas SchifferSection of Computational Biomedicine, Boston University School of MedicineVerified email at bu.edu
Shuji OginoProf (Pathol & Epidemiol), Harvard; Broad Institute; Dana-Farber HCC Immunology Prog; MPE Chief, BWHVerified email at bwh.harvard.edu
Yujin HoshidaUniversity of Texas Southwestern Medical CenterVerified email at utsouthwestern.edu

Levi Waldron

City University of New York School of Public Health

Verified email at sph.cuny.edu - Homepage

Bioinformatics


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Metagenomic biomarker discovery and explanation N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ... Genome biology 12, 1-18, 2011	10085	2011
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015	3067	2015
Metagenomic microbial community profiling using unique clade-specific marker genes N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ... Nature methods 9 (8), 811-814, 2012	1749	2012
Stem cell gene expression programs influence clinical outcome in human leukemia K Eppert, K Takenaka, ER Lechman, L Waldron, B Nilsson, P Van Galen, ... Nature medicine 17 (9), 1086-1093, 2011	1071	2011
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ... Genome biology 13, 1-18, 2012	966	2012
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ... Nature medicine 25 (4), 679-689, 2019	655	2019
Relating the metatranscriptome and metagenome of the human gut EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ... Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014	591	2014
Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum M Yamauchi, T Morikawa, A Kuchiba, Y Imamura, ZR Qian, R Nishihara, ... Gut 61 (6), 847-854, 2012	591	2012
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ... PLoS computational biology 9 (1), e1002863, 2013	554	2013
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019	520	2019
Comprehensive MicroRNA Profiling for Head and Neck Squamous Cell CarcinomasmiRNA Profile of HNSCC ABY Hui, M Lenarduzzi, T Krushel, L Waldron, M Pintilie, W Shi, ... Clinical cancer research 16 (4), 1129-1139, 2010	476	2010
Multivariable association discovery in population-scale meta-omics studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS computational biology 17 (11), e1009442, 2021	459	2021
Machine learning meta-analysis of large metagenomic datasets: tools and biological insights E Pasolli, DT Truong, F Malik, L Waldron, N Segata PLoS computational biology 12 (7), e1004977, 2016	442	2016
MicroRNA-301 Mediates Proliferation and Invasion in Human Breast CancermiR-301, Breast Cancer Invasion, Metastases, SKA2 W Shi, K Gerster, NM Alajez, J Tsang, L Waldron, M Pintilie, AB Hui, ... Cancer research 71 (8), 2926-2937, 2011	399	2011
Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature methods 17 (2), 137-145, 2020	394	2020
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature Medicine 27 (2), 321-332, 2021	387	2021
mRNA transcript quantification in archival samples using multiplexed, color-coded probes PP Reis, L Waldron, RS Goswami, W Xu, Y Xuan, B Perez-Ordonez, ... BMC biotechnology 11 (1), 1-10, 2011	292	2011
Accessible, curated metagenomic data through ExperimentHub E Pasolli, L Schiffer, P Manghi, A Renson, V Obenchain, DT Truong, ... Nature methods 14 (11), 1023-1024, 2017	255	2017
Racial/ethnic disparities in genomic sequencing DE Spratt, T Chan, L Waldron, C Speers, FY Feng, OO Ogunwobi, ... JAMA oncology 2 (8), 1070-1074, 2016	248	2016
Transparency and reproducibility in artificial intelligence B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ... Nature 586 (7829), E14-E16, 2020	221	2020

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