| ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ... Methods in enzymology 487, 545-574, 2011 | 1738 | 2011 |
| Toward high-resolution de novo structure prediction for small proteins P Bradley, KMS Misura, D Baker Science 309 (5742), 1868-1871, 2005 | 1061 | 2005 |
| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 875 | 2017 |
| The crystal structure of TAL effector PthXo1 bound to its DNA target ANS Mak, P Bradley, RA Cernadas, AJ Bogdanove, BL Stoddard Science 335 (6069), 716-719, 2012 | 678 | 2012 |
| Quantifiable predictive features define epitope-specific T cell receptor repertoires P Dash, AJ Fiore-Gartland, T Hertz, GC Wang, S Sharma, A Souquette, ... Nature 547 (7661), 89-93, 2017 | 540 | 2017 |
| Protein–protein docking with backbone flexibility C Wang, P Bradley, D Baker Journal of molecular biology 373 (2), 503-519, 2007 | 453 | 2007 |
| Advances in protein structure prediction and design B Kuhlman, P Bradley Nature Reviews Molecular Cell Biology 20 (11), 681-697, 2019 | 392 | 2019 |
| High-resolution structure prediction and the crystallographic phase problem B Qian, S Raman, R Das, P Bradley, AJ McCoy, RJ Read, D Baker Nature 450 (7167), 259-264, 2007 | 374 | 2007 |
| Progress in modeling of protein structures and interactions O Schueler-Furman, C Wang, P Bradley, K Misura, D Baker science 310 (5748), 638-642, 2005 | 365 | 2005 |
| Automated prediction of CASP‐5 structures using the Robetta server D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ... Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003 | 352 | 2003 |
| Assigning function to yeast proteins by integration of technologies TR Hazbun, L Malmström, S Anderson, BJ Graczyk, B Fox, M Riffle, ... Molecular cell 12 (6), 1353-1365, 2003 | 331 | 2003 |
| De novo prediction of three-dimensional structures for major protein families R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ... Journal of molecular biology 322 (1), 65-78, 2002 | 319 | 2002 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 299 | 2020 |
| Simultaneous optimization of biomolecular energy functions on features from small molecules and macromolecules H Park, P Bradley, P Greisen Jr, Y Liu, VK Mulligan, DE Kim, D Baker, ... Journal of chemical theory and computation 12 (12), 6201-6212, 2016 | 294 | 2016 |
| U2AF1 mutations alter splice site recognition in hematological malignancies JO Ilagan, A Ramakrishnan, B Hayes, ME Murphy, AS Zebari, P Bradley, ... Genome research 25 (1), 14-26, 2015 | 271 | 2015 |
| Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ... Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007 | 261 | 2007 |
| Rosetta predictions in CASP5: successes, failures, and prospects for complete automation P Bradley, D Chivian, J Meiler, KMS Misura, CA Rohl, WR Schief, ... Proteins: Structure, Function, and Bioinformatics 53 (S6), 457-468, 2003 | 243 | 2003 |
| Combined covalent-electrostatic model of hydrogen bonding improves structure prediction with Rosetta MJ O’Meara, A Leaver-Fay, MD Tyka, A Stein, K Houlihan, F DiMaio, ... Journal of chemical theory and computation 11 (2), 609-622, 2015 | 219 | 2015 |
| Modeling symmetric macromolecular structures in Rosetta3 F DiMaio, A Leaver-Fay, P Bradley, D Baker, I André PloS one 6 (6), e20450, 2011 | 209 | 2011 |
| Free modeling with Rosetta in CASP6 P Bradley, L Malmström, B Qian, J Schonbrun, D Chivian, DE Kim, ... Proteins: Structure, Function, and Bioinformatics 61 (S7), 128-134, 2005 | 191 | 2005 |
David BakerUniversity of WashingtonVerified email at uw.edu
