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Avital Sharir-Ivry
Avital Sharir-Ivry
Verified email at mcgill.ca
Title
Cited by
Cited by
Year
Density embedded VB/MM: A hybrid ab initio VB/MM with electrostatic embedding
A Sharir-Ivry, HA Crown, W Wu, A Shurki
The Journal of Physical Chemistry A 112 (11), 2489-2496, 2008
252008
The Impact of Native State Switching on Protein Sequence Evolution
A Sharir-Ivry, Y Xia
Molecular biology and evolution, 2017
172017
A VB/MM View of the Identity SN2 Valence-Bond State Correlation Diagram in Aqueous Solution
A Sharir-Ivry, A Shurki
The Journal of Physical Chemistry A 112 (50), 13157-13163, 2008
162008
Nature of long-range evolutionary constraint in enzymes: insights from comparison to pseudoenzymes with similar structures
A Sharir-Ivry, Y Xia
Molecular Biology and Evolution, 2018
142018
VB/MM Protein Landscapes: A Study of the SN2 Reaction in Haloalkane Dehalogenase
A Sharir-Ivry, T Shnerb, M Strajbl, A Shurki
The Journal of Physical Chemistry B 114 (6), 2212-2218, 2010
132010
Quantifying evolutionary importance of protein sites: A Tale of two measures
A Sharir-Ivry, Y Xia
PLoS Genetics 17 (4), e1009476, 2021
122021
Valence bond and enzyme catalysis: a time to break down and a time to build up
A Sharir‐Ivry, R Varatharaj, A Shurki
Chemistry–A European Journal 21 (19), 7159-7169, 2015
102015
Challenges within the linear response approximation when studying enzyme catalysis and effects of mutations
A Sharir-Ivry, R Varatharaj, A Shurki
Journal of Chemical Theory and Computation 11 (1), 293-302, 2015
92015
VB/MM The Validity of the Underlying Approximations
A Sharir-Ivry, A Shurki
The Journal of Physical Chemistry B 112 (39), 12491-12497, 2008
92008
Non-catalytic binding sites induce weaker long-range evolutionary rate gradients than catalytic sites in enzymes
A Sharir-Ivry, Y Xia
Journal of molecular biology 431 (19), 3860-3870, 2019
72019
Using pseudoenzymes to probe evolutionary design principles of enzymes
A Sharir-Ivry, Y Xia
Evolutionary Bioinformatics 15, 1176934319855937, 2019
62019
Valence Bond‐Based Hybrid Quantum Mechanics Molecular Mechanics Approaches and Proper Inclusion of the Effect of the Surroundings
A Shurki, A Sharir‐Ivry
Israel Journal of Chemistry 54 (8‐9), 1189-1204, 2014
42014
Implementing Protein-Polarized Ligand Charges into Relative Protein Ligand Binding Affinities Calculations
S Adam, I Kass, DK Zussman, G Masarati, D Shemesh, A Sharir-Ivry
2023
Enzyme catalysis: Insights from valence bond
A Sharir-Ivry, V Rajapandian, A Shurki
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Insights from Valence Bond Into Catalysis in the Haloalkane Dehalogenase Enzyme
A Sharir-Ivry
Hebrew University of Jerusalem, 2013
2013
VB/MM-Methods for Reactions in Large Systems: Development and Applications
A Sharir-Ivry
Hebrew University of Jerusalem, 2007
2007
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