Ludwig Geistlinger
Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
Verified email at - Homepage
Cited by
Cited by
Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum
C Gieger, L Geistlinger, E Altmaier, M Hrabé de Angelis, F Kronenberg, ...
PLoS genetics 4 (11), e1000282, 2008
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2020
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature medicine 27 (2), 321-332, 2021
Reporting guidelines for human microbiome research: the STORMS checklist
C Mirzayi, A Renson, Genomic Standards Consortium, ...
Nature medicine 27 (11), 1885-1892, 2021
Toward a gold standard for benchmarking gene set enrichment analysis
L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ...
Briefings in bioinformatics 22 (1), 545-556, 2021
Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma
GM Chen, L Kannan, L Geistlinger, V Kofia, Z Safikhani, D Gendoo, ...
Clinical Cancer Research 24 (20), 5037-5047, 2018
Factors influencing the efficiency of generating genetically engineered pigs by nuclear transfer: multi-factorial analysis of a large data set
M Kurome, L Geistlinger, B Kessler, V Zakhartchenko, N Klymiuk, ...
BMC biotechnology 13 (1), 1-13, 2013
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems
L Geistlinger, G Csaba, R Küffner, N Mulder, R Zimmer
Bioinformatics 27 (13), i366-i373, 2011
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set-& network-based enrichment analysis
L Geistlinger, G Csaba, R Zimmer
BMC bioinformatics 17, 1-11, 2016
Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma
L Geistlinger, S Oh, M Ramos, L Schiffer, RS LaRue, CM Henzler, ...
Cancer research 80 (20), 4335-4345, 2020
Genome-wide detection of CNVs and their association with meat tenderness in Nelore cattle
VH Silva, LCA Regitano, L Geistlinger, F Pértille, PF Giachetto, ...
PloS one 11 (6), e0157711, 2016
Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits
ASM Cesar, LCA Regitano, JM Reecy, MD Poleti, PSN Oliveira, ...
BMC genomics 19, 1-20, 2018
Multiomic integration of public oncology databases in bioconductor
M Ramos, L Geistlinger, S Oh, L Schiffer, R Azhar, H Kodali, I de Bruijn, ...
JCO Clinical Cancer Informatics 1, 958-971, 2020
Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study
F Beghini, A Renson, CP Zolnik, L Geistlinger, M Usyk, TU Moody, ...
Annals of epidemiology 34, 18-25. e3, 2019
A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae
L Geistlinger, G Csaba, S Dirmeier, R Küffner, R Zimmer
Nucleic acids research 41 (18), 8452-8463, 2013
HMP16SData: efficient access to the Human Microbiome Project through Bioconductor
L Schiffer, R Azhar, L Shepherd, M Ramos, L Geistlinger, C Huttenhower, ...
Am J Epidemiol 188 (6), 1023-1026, 2018
Detection of co-expressed pathway modules associated with mineral concentration and meat quality in nelore cattle
WJS Diniz, G Mazzoni, LL Coutinho, P Banerjee, L Geistlinger, ...
Frontiers in genetics 10, 210, 2019
Evolution of protein phosphorylation for distinct functional modules in vertebrate genomes
Z Wang, G Ding, L Geistlinger, H Li, L Liu, R Zeng, Y Tateno, Y Li
Molecular biology and evolution 28 (3), 1131-1140, 2011
Genome-wide association study identifies two novel regions at 11p15. 5-p13 and 1p31 with major impact on acute-phase serum amyloid A
C Marzi, E Albrecht, PG Hysi, V Lagou, M Waldenberger, A Toenjes, ...
PLoS genetics 6 (11), e1001213, 2010
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