Timothy Bailey

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William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Mikael BodenThe University of QueenslandVerified email at uq.edu.au
Charles E. GrantUniversity of WashingtonVerified email at uw.edu
Fabian A. BuskeGarvan Institute of Medical ResearchVerified email at garvan.org.au
Martin FrithNational Institute of Advanced Industrial Science and Technology (AIST), University of TokyoVerified email at edu.k.u-tokyo.ac.jp
Charles ElkanProfessor of Computer Science, University of California, San DiegoVerified email at ucsd.edu
Michael GribskovPurdue UniversityVerified email at purdue.edu
Wilfred W. LiUniversity of California, San DiegoVerified email at ucsd.edu
Denis C. BauerCSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics TeamVerified email at csiro.au
Andrew PerkinsProfessor of Cancer GenomicsVerified email at monash.edu
Tom WhitingtonSchibstedVerified email at schibsted.com
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
Michael E. BakerResearch Professor, University of California, San DiegoVerified email at ucsd.edu
Bostjan KobeProfessor of Structural Biology, The University of QueenslandVerified email at uq.edu.au
George ChurchHarvard Medical SchoolVerified email at harvard.edu
Chun Jimmie YeAssociate Professor of Medicine, UCSFVerified email at ucsf.edu
Saurabh SinhaBiomedical Engineering, Georgia Institute of TechnologyVerified email at bme.gatech.edu
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu

Timothy Bailey

University of Nevada, Reno

Verified email at unr.edu - Homepage

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009	8930	2009
Fitting a mixture model by expectation maximization to discover motifs in bipolymers TL Bailey, C Elkan Department of Computer Science and Engineering, University of California …, 1994	6063	1994
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005	3976	2005
FIMO: scanning for occurrences of a given motif CE Grant, TL Bailey, WS Noble Bioinformatics 27 (7), 1017-1018, 2011	3557	2011
MEME: discovering and analyzing DNA and protein sequence motifs TL Bailey, N Williams, C Misleh, WW Li Nucleic acids research 34 (suppl_2), W369-W373, 2006	2642	2006
The MEME suite TL Bailey, J Johnson, CE Grant, WS Noble Nucleic acids research 43 (W1), W39-W49, 2015	2435	2015
Quantifying similarity between motifs S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble Genome biology 8 (2), 1-9, 2007	1840	2007
MEME-ChIP: motif analysis of large DNA datasets P Machanick, TL Bailey Bioinformatics 27 (12), 1696-1697, 2011	1614	2011
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1590	2005
Combining evidence using p-values: application to sequence homology searches. TL Bailey, M Gribskov Bioinformatics (Oxford, England) 14 (1), 48-54, 1998	1444	1998
DREME: motif discovery in transcription factor ChIP-seq data TL Bailey Bioinformatics 27 (12), 1653-1659, 2011	1127	2011
Unsupervised learning of multiple motifs in biopolymers using expectation maximization TL Bailey, C Elkan Machine learning 21, 51-80, 1995	971	1995
The value of prior knowledge in discovering motifs with MEME. TL Bailey, C Elkan Ismb 3, 21-29, 1995	910	1995
Defining the RGG/RG motif P Thandapani, TR O’Connor, TL Bailey, S Richard Molecular cell 50 (5), 613-623, 2013	628	2013
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data RC McLeay, TL Bailey BMC bioinformatics 11 (1), 1-11, 2010	597	2010
Inferring direct DNA binding from ChIP-seq TL Bailey, P Machanick Nucleic acids research 40 (17), e128-e128, 2012	488	2012
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014	470	2014
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	414	2009
Discovering sequence motifs with arbitrary insertions and deletions MC Frith, NFW Saunders, B Kobe, TL Bailey PLoS computational biology 4 (5), e1000071, 2008	381	2008
Practical guidelines for the comprehensive analysis of ChIP-seq data T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ... PLoS computational biology 9 (11), e1003326, 2013	334	2013

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