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Barbora Kozlikova
Barbora Kozlikova
assoc. prof., Masaryk University
Verified email at fi.muni.cz
Title
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Cited by
Year
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...
Public Library of Science 8 (10), e1002708, 2012
11612012
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
2862018
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ...
Bioinformatics 30 (18), 2684-2685, 2014
1622014
CAVER: algorithms for analyzing dynamics of tunnels in macromolecules
A Pavelka, E Sebestova, B Kozlikova, J Brezovsky, J Sochor, ...
IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015
1362015
Visualization of biomolecular structures: State of the art revisited
B Kozlíková, M Krone, M Falk, N Lindow, M Baaden, D Baum, I Viola, ...
Computer Graphics Forum 36 (8), 178-204, 2017
1282017
Visual analysis of biomolecular cavities: State of the art
M Krone, B Kozlíková, N Lindow, M Baaden, D Baum, J Parulek, HC Hege, ...
Computer Graphics Forum 35 (3), 527-551, 2016
772016
Intrinsic-extrinsic convolution and pooling for learning on 3d protein structures
P Hermosilla, M Schäfer, M Lang, G Fackelmann, PP Vázquez, ...
arXiv preprint arXiv:2007.06252, 2020
622020
Instant construction and visualization of crowded biological environments
T Klein, L Autin, B Kozlíková, DS Goodsell, A Olson, ME Gröller, I Viola
IEEE transactions on visualization and computer graphics 24 (1), 862-872, 2017
442017
Visualization of biomolecular structures: State of the art
B Kozlikova, M Krone, M Falk, N Lindow, M Baaden, D Baum, I Viola, ...
402015
Multiscale molecular visualization
H Miao, T Klein, D Kouřil, P Mindek, K Schatz, ME Gröller, B Kozlíková, ...
Journal of molecular biology 431 (6), 1049-1070, 2019
382019
Computational analysis of protein tunnels and channels
J Brezovsky, B Kozlikova, J Damborsky
Protein Engineering: Methods and Protocols, 25-42, 2018
352018
MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids
J Byška, A Jurčík, ME Gröller, I Viola, B Kozlikova
Computer Graphics Forum 34 (3), 1-10, 2015
322015
AnimoAminoMiner: Exploration of protein tunnels and their properties in molecular dynamics
J Byška, M Le Muzic, ME Gröller, I Viola, B Kozlikova
IEEE transactions on visualization and computer graphics 22 (1), 747-756, 2015
312015
Labels on levels: Labeling of multi-scale multi-instance and crowded 3D biological environments
D Kouřil, L Čmolík, B Kozlíková, HY Wu, G Johnson, DS Goodsell, ...
IEEE transactions on visualization and computer graphics 25 (1), 977-986, 2018
272018
The moving target of visualization software for an increasingly complex world
G Reina, H Childs, K Matković, K Bühler, M Waldner, D Pugmire, ...
Computers & graphics 87, 12-29, 2020
242020
Analysis of long molecular dynamics simulations using interactive focus+ context visualization
J Byška, T Trautner, SM Marques, J Damborský, B Kozlíková, M Waldner
Computer Graphics Forum 38 (3), 441-453, 2019
242019
Human-computer interaction in real-3D and Pseudo-3D cartographic visualization: A comparative study
K Špriňarová, V Juřík, Č Šašinka, L Herman, Z Štěrba, Z Stachoň, ...
Cartography-Maps Connecting the World: 27th International Cartographic …, 2015
242015
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality
V Brůža, J Byška, J Mičan, B Kozlíková
Computers & Graphics 98, 280-292, 2021
232021
Interactive exploration of ligand transportation through protein tunnels
K Furmanová, M Jarešová, J Byška, A Jurčík, J Parulek, H Hauser, ...
BMC bioinformatics 18, 1-16, 2017
232017
Visualization of large molecular trajectories
D Duran, P Hermosilla, T Ropinski, B Kozlikova, A Vinacua, PP Vázquez
IEEE Transactions on Visualization and Computer Graphics 25 (1), 987-996, 2018
212018
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