| Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures D Sehnal, S Bittrich, M Deshpande, R Svobodová, K Berka, V Bazgier, ... Nucleic Acids Research 49 (W1), W431-W437, 2021 | 882 | 2021 |
| CATH: increased structural coverage of functional space I Sillitoe, N Bordin, N Dawson, VP Waman, P Ashford, HM Scholes, ... Nucleic Acids Research 49 (D1), D266-D273, 2021 | 389 | 2021 |
| PDBsum additions TAP De Beer, K Berka, JM Thornton, RA Laskowski Nucleic acids research 42 (D1), D292-D296, 2014 | 387 | 2014 |
| MOLE 2.0: advanced approach for analysis of biomacromolecular channels D Sehnal, RS Vařeková, K Berka, L Pravda, V Navrátilová, P Banáš, ... Journal of Cheminformatics 5, 39, 2013 | 337 | 2013 |
| Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission K Hola, AB Bourlinos, O Kozak, K Berka, KM Siskova, M Havrdova, ... Carbon 70, 279-286, 2014 | 289 | 2014 |
| MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update) L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ... Nucleic acids research 46 (W1), W368-W373, 2018 | 285 | 2018 |
| Membrane position of ibuprofen agrees with suggested access path entrance to cytochrome P450 2C9 active site K Berka, T Hendrychová, P Anzenbacher, M Otyepka The journal of physical chemistry A 115 (41), 11248-11255, 2011 | 190 | 2011 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 186 | 2016 |
| Membrane-attached mammalian cytochromes P450: An overview of the membrane's effects on structure, drug binding, and interactions with redox partners M Šrejber, V Navrátilová, M Paloncýová, V Bazgier, K Berka, ... Journal of inorganic biochemistry 183, 117-136, 2018 | 184 | 2018 |
| Quantum chemical benchmark energy and geometry database for molecular clusters and complex molecular systems (www. begdb. com): a users manual and examples J Řezáč, P Jurečka, KE Riley, J Černý, H Valdes, K Pluháčková, K Berka, ... Collection of Czechoslovak Chemical Communications 73 (10), 1261-1270, 2008 | 171 | 2008 |
| Positioning of Antioxidant Quercetin and Its Metabolites in Lipid Bilayer Membranes: Implication for Their Lipid-Peroxidation Inhibition P Košinová, K Berka, M Wykes, M Otyepka, P Trouillas The Journal of Physical Chemistry B 116 (4), 1309-1318, 2012 | 169 | 2012 |
| MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels K Berka, O Hanák, D Sehnal, P Banáš, V Navrátilová, D Jaiswal, ... Nucleic acids research 40 (W1), W222-W227, 2012 | 155 | 2012 |
| LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data D Sehnal, M Deshpande, RS Vařeková, S Mir, K Berka, A Midlik, L Pravda, ... Nature methods 14 (12), 1121-1122, 2017 | 141 | 2017 |
| Anatomy of enzyme channels L Pravda, K Berka, RS Vařeková, D Sehnal, P Banáš, RA Laskowski, ... BMC Bioinformatics 15 (1), 379, 2014 | 139 | 2014 |
| Amphiphilic drug-like molecules accumulate in a membrane below the head group region M Paloncyova, R DeVane, B Murch, K Berka, M Otyepka The Journal of Physical Chemistry B 118 (4), 1030-1039, 2014 | 122 | 2014 |
| Behavior of Human Cytochromes P450 on Lipid Membranes K Berka, M Paloncýová, P Anzenbacher, M Otyepka The Journal of Physical Chemistry B 117 (39), 11556-11564, 2013 | 120 | 2013 |
| Convergence of Free Energy Profile of Coumarin in Lipid Bilayer M Paloncýová, K Berka, M Otyepka Journal of Chemical Theory and Computation 8 (4), 1200-1211, 2012 | 110 | 2012 |
| Synergism of antioxidant action of vitamins E, C and quercetin is related to formation of molecular associations in biomembranes G Fabre, I Bayach, K Berka, M Paloncýová, M Starok, C Rossi, JL Duroux, ... Chemical Communications 51 (36), 7713-7716, 2015 | 108 | 2015 |
| Representative Amino Acid Side Chain Interactions in Proteins. A Comparison of Highly Accurate Correlated ab Initio Quantum Chemical and Empirical Potential … K Berka, R Laskowski, KE Riley, P Hobza, J Vondrasek Journal of Chemical Theory and Computation 5 (4), 982-992, 2009 | 107 | 2009 |
| Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane L Biedermannova, KE Riley, K Berka, P Hobza, J Vondrasek Physical Chemistry Chemical Physics 10 (42), 6350-6359, 2008 | 100 | 2008 |
Michal OtyepkaCATRIN, Palacký University; IT4Innovations, VŠB Technical University of OstravaVerified email at upol.cz
