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Mark T. Holder
Mark T. Holder
Associate Professor of Ecology and Evolutionary Biology, University of Kansas
Verified email at ku.edu - Homepage
Title
Cited by
Cited by
Year
DendroPy: a Python library for phylogenetic computing
J Sukumaran, MT Holder
Bioinformatics 26 (12), 1569-1571, 2010
14342010
Phylogeny estimation: traditional and Bayesian approaches
M Holder, PO Lewis
Nature reviews genetics 4 (4), 275-284, 2003
8842003
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics
DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ...
Systematic biology 61 (1), 170-173, 2012
5392012
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ...
Systematic biology 61 (1), 90, 2012
3732012
Polytomies and Bayesian phylogenetic inference
PO Lewis, MT Holder, KE Holsinger
Systematic biology 54 (2), 241-253, 2005
3272005
Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness
V Edgcomb, W Orsi, J Bunge, S Jeon, R Christen, C Leslin, M Holder, ...
The ISME journal 5 (8), 1344-1356, 2011
2332011
The posterior and the prior in Bayesian phylogenetics
ME Alfaro, MT Holder
Annual Review of Ecology, Evolution, and Systematics, 19-42, 2006
2072006
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
1852012
Difficulties in detecting hybridization
MT Holder, JA Anderson, AK Holloway
Systematic Biology 50 (6), 978-982, 2001
1782001
Detection of multiple paternity in the Kemp's ridley sea turtle with limited sampling
K Kichler
Mol Ecol 8, 819-830, 1999
1481999
Explaining species distribution patterns through hierarchical modeling
AE Gelfand, M Holder, A Latimer, PO Lewis, AG Rebelo, JA Silander Jr, ...
Bayesian Analysis 1 (1), 41-92, 2006
1382006
Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference
MJ Brauer, MT Holder, LA Dries, DJ Zwickl, PO Lewis, DM Hillis
Molecular biology and evolution 19 (10), 1717-1726, 2002
1152002
A Dirichlet process prior for estimating lineage-specific substitution rates
TA Heath, MT Holder, JP Huelsenbeck
Molecular biology and evolution 29 (3), 939-955, 2012
1052012
The big questions for biodiversity informatics
AT Peterson, S Knapp, R Guralnick, J Soberón, MT Holder
Systematics and biodiversity 8 (2), 159-168, 2010
982010
Two living species of coelacanths?
MT Holder, MV Erdmann, TP Wilcox, RL Caldwell, DM Hillis
Proceedings of the National Academy of Sciences 96 (22), 12616-12620, 1999
971999
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
952012
The phylogenetic position of Myxozoa: exploring conflicting signals in phylogenomic and ribosomal data sets
NM Evans, MT Holder, MS Barbeitos, B Okamura, P Cartwright
Molecular biology and evolution 27 (12), 2733-2746, 2010
922010
Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics
DJ Zwickl, MT Holder
Systematic Biology 53 (6), 877-888, 2004
882004
A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics
MT Holder, J Sukumaran, PO Lewis
Systematic biology 57 (5), 814-821, 2008
832008
Evidence for Climate‐driven Diversification? A Caution For Interpreting ABC Inferences of Simultaneous Historical Events
JR Oaks, J Sukumaran, JA Esselstyn, CW Linkem, CD Siler, MT Holder, ...
Evolution 67 (4), 991-1010, 2013
782013
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