Michal Otyepka
Michal Otyepka
Department of Physical Chemistry, Palacký University
Verified email at upol.cz
TitleCited byYear
Functionalization of graphene: covalent and non-covalent approaches, derivatives and applications
V Georgakilas, M Otyepka, AB Bourlinos, V Chandra, N Kim, KC Kemp, ...
Chemical reviews 112 (11), 6156-6214, 2012
26682012
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský
BMC bioinformatics 7 (1), 316, 2006
5212006
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles
M Zgarbová, M Otyepka, J Šponer, A Mládek, P Banáš, ...
Journal of chemical theory and computation 7 (9), 2886-2902, 2011
4232011
Graphene fluoride: a stable stoichiometric graphene derivative and its chemical conversion to graphene
R Zbořil, F Karlický, AB Bourlinos, TA Steriotis, AK Stubos, V Georgakilas, ...
small 6 (24), 2885-2891, 2010
3232010
Adsorption of small organic molecules on graphene
P Lazar, F Karlicky, P Jurečka, M Kocman, E Otyepková, K Šafářová, ...
Journal of the American Chemical Society 135 (16), 6372-6377, 2013
2812013
Performance of molecular mechanics force fields for RNA simulations: stability of UUCG and GNRA hairpins
P Banás, D Hollas, M Zgarbová, P Jurecka, M Orozco, TE Cheatham III, ...
Journal of Chemical Theory and Computation 6 (12), 3836-3849, 2010
2532010
MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels
M Petřek, P Košinová, J Koča, M Otyepka
Structure 15 (11), 1357-1363, 2007
2522007
Halogenated graphenes: rapidly growing family of graphene derivatives
F Karlicky, K Kumara Ramanatha Datta, M Otyepka, R Zboril
ACS nano 7 (8), 6434-6464, 2013
2312013
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ...
Nature chemical biology 5 (10), 727, 2009
2182009
Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in
MA Ditzler, M Otyepka, J Sponer, NG Walter
Accounts of chemical research 43 (1), 40-47, 2009
1642009
Toward improved description of DNA backbone: revisiting epsilon and zeta torsion force field parameters
M Zgarbová, FJ Luque, J Šponer, TE Cheatham III, M Otyepka, ...
Journal of chemical theory and computation 9 (5), 2339-2354, 2013
1632013
Biomimetic Superhydrophobic/Superoleophilic Highly Fluorinated Graphene Oxide and ZIF‐8 Composites for Oil–Water Separation
K Jayaramulu, KKR Datta, C Rösler, M Petr, M Otyepka, R Zboril, ...
Angewandte Chemie International Edition 55 (3), 1178-1182, 2016
1592016
Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA, and Z-DNA
M Krepl, M Zgarbová, P Stadlbauer, M Otyepka, P Banáš, J Koca, ...
Journal of chemical theory and computation 8 (7), 2506-2520, 2012
1542012
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
D Sehnal, RS Vařeková, K Berka, L Pravda, V Navrátilová, P Banáš, ...
Journal of cheminformatics 5 (1), 39, 2013
1492013
What common structural features and variations of mammalian P450s are known to date?
M Otyepka, J Skopalík, E Anzenbacherová, P Anzenbacher
Biochimica et Biophysica Acta (BBA)-General Subjects 1770 (3), 376-389, 2007
1392007
Stabilizing and modulating color by copigmentation: Insights from theory and experiment
P Trouillas, JC Sancho-Garcia, V De Freitas, J Gierschner, M Otyepka, ...
Chemical reviews 116 (9), 4937-4982, 2016
1312016
Membrane position of ibuprofen agrees with suggested access path entrance to cytochrome P450 2C9 active site
K Berka, T Hendrychová, P Anzenbacher, M Otyepka
The journal of physical chemistry A 115 (41), 11248-11255, 2011
1302011
Modelling of graphene functionalization
M Pykal, P Jurečka, F Karlický, M Otyepka
Physical Chemistry Chemical Physics 18 (9), 6351-6372, 2016
1252016
Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission
K Hola, AB Bourlinos, O Kozak, K Berka, KM Siskova, M Havrdova, ...
Carbon 70, 279-286, 2014
1242014
Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA
M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ...
Journal of chemical theory and computation 11 (12), 5723-5736, 2015
1152015
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