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Rory Donovan-Maiye
Rory Donovan-Maiye
Novo Nordisk
E-mailová adresa ověřena na: alumni.reed.edu - Domovská stránka
Název
Citace
Citace
Rok
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
AJ Sedgewick, I Shi, RM Donovan, PV Benos
BMC bioinformatics 17, 307-318, 2016
862016
Integrated intracellular organization and its variations in human iPS cells
MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ...
Nature 613 (7943), 345-354, 2023
662023
Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories
RM Donovan, AJ Sedgewick, JR Faeder, DM Zuckerman
The Journal of chemical physics 139 (11), 2013
612013
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
KA Gerbin, T Grancharova, RM Donovan-Maiye, MC Hendershott, ...
Cell Systems 12 (6), 670-687. e10, 2021
482021
Building a 3d integrated cell
GR Johnson, RM Donovan-Maiye, MM Maleckar
BioRxiv, 238378, 2017
472017
Unbiased rare event sampling in spatial stochastic systems biology models using a weighted ensemble of trajectories
RM Donovan, JJ Tapia, DP Sullivan, JR Faeder, RF Murphy, M Dittrich, ...
PLoS computational biology 12 (2), e1004611, 2016
442016
Atlas of transcription factor binding sites from ENCODE DNase hypersensitivity data across 27 tissue types
CC Funk, AM Casella, S Jung, MA Richards, A Rodriguez, P Shannon, ...
Cell reports 32 (7), 2020
332020
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
T Grancharova, KA Gerbin, AB Rosenberg, CM Roco, JE Arakaki, ...
Scientific Reports 11 (1), 15845, 2021
302021
Degradation of MgB/sub 2/thin films in water
Y Cui, JE Jones, A Beckley, R Donovan, D Lishego, E Maertz, ...
IEEE transactions on applied superconductivity 15 (2), 224-227, 2005
302005
Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process
R Anandakrishnan, Z Zhang, R Donovan-Maiye, DM Zuckerman
Proceedings of the National Academy of Sciences 113 (40), 11220-11225, 2016
242016
A deep generative model of 3D single-cell organization
RM Donovan-Maiye, JM Brown, CK Chan, L Ding, C Yan, N Gaudreault, ...
PLOS Computational Biology 18 (1), e1009155, 2022
222022
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable
MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ...
BioRxiv, 2020.12. 08.415562, 2020
202020
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
EW Deutsch, R Kramer, J Ames, A Bauman, DS Campbell, K Chard, ...
bioRxiv, 258822, 2018
52018
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes. Cell Syst. 2021; 12 (6): 670–687. e10
KA Gerbin, T Grancharova, RM Donovan-Maiye, MC Hendershott, ...
5
Studying stem cell organization using “label-free” methods and a novel generative adversarial model
G Johnson, R Donovan-Maiye, C Ounkomol, MM Maleckar
Biophysical Journal 114 (3), 43a, 2018
42018
Systematic testing of belief-propagation estimates for absolute free energies in atomistic peptides and proteins
RM Donovan-Maiye, CJ Langmead, DM Zuckerman
Journal of chemical theory and computation 14 (1), 426-443, 2018
42018
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE
CC Funk, MA Richards, P Shannon, R Donovan-Maiye, N Rappaport, ...
Alzheimer's & Dementia 14 (7S_Part_19), P1014-P1015, 2018
2018
A novel conditional model of cell organization: building an integrated cell
GR Johnson, R Donovan-Maiye, MM Maleckar, CD Williams
INTEGRATIVE AND COMPARATIVE BIOLOGY 58, E109-E109, 2018
2018
Efficient sampling in stochastic biological models
R Donovan-Maiye
University of Pittsburgh, 2016
2016
Quantization of Constrained Systems
RM Donovan
Reed College, 2004
2004
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Články 1–20