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Rory Donovan-Maiye
Rory Donovan-Maiye
Novo Nordisk
E-mailová adresa ověřena na: alumni.reed.edu - Domovská stránka
Název
Citace
Citace
Rok
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
AJ Sedgewick, I Shi, RM Donovan, PV Benos
BMC bioinformatics 17, 307-318, 2016
862016
Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories
RM Donovan, AJ Sedgewick, JR Faeder, DM Zuckerman
The Journal of chemical physics 139 (11), 2013
622013
Integrated intracellular organization and its variations in human iPS cells
MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ...
Nature 613 (7943), 345-354, 2023
612023
Building a 3d integrated cell
GR Johnson, RM Donovan-Maiye, MM Maleckar
BioRxiv, 238378, 2017
482017
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
KA Gerbin, T Grancharova, RM Donovan-Maiye, MC Hendershott, ...
Cell Systems 12 (6), 670-687. e10, 2021
452021
Unbiased rare event sampling in spatial stochastic systems biology models using a weighted ensemble of trajectories
RM Donovan, JJ Tapia, DP Sullivan, JR Faeder, RF Murphy, M Dittrich, ...
PLoS computational biology 12 (2), e1004611, 2016
442016
Atlas of transcription factor binding sites from ENCODE DNase hypersensitivity data across 27 tissue types
CC Funk, AM Casella, S Jung, MA Richards, A Rodriguez, P Shannon, ...
Cell reports 32 (7), 2020
342020
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
T Grancharova, KA Gerbin, AB Rosenberg, CM Roco, JE Arakaki, ...
Scientific Reports 11 (1), 15845, 2021
292021
Degradation of MgB/sub 2/thin films in water
Y Cui, JE Jones, A Beckley, R Donovan, D Lishego, E Maertz, ...
IEEE transactions on applied superconductivity 15 (2), 224-227, 2005
292005
Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process
R Anandakrishnan, Z Zhang, R Donovan-Maiye, DM Zuckerman
Proceedings of the National Academy of Sciences 113 (40), 11220-11225, 2016
242016
A deep generative model of 3D single-cell organization
RM Donovan-Maiye, JM Brown, CK Chan, L Ding, C Yan, N Gaudreault, ...
PLOS Computational Biology 18 (1), e1009155, 2022
222022
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable
MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ...
BioRxiv, 2020.12. 08.415562, 2020
192020
BDQC: a general-purpose analytics tool for domain-blind validation of Big Data
EW Deutsch, R Kramer, J Ames, A Bauman, DS Campbell, K Chard, ...
bioRxiv, 258822, 2018
52018
Studying stem cell organization using “label-free” methods and a novel generative adversarial model
G Johnson, R Donovan-Maiye, C Ounkomol, MM Maleckar
Biophysical Journal 114 (3), 43a, 2018
42018
Systematic testing of belief-propagation estimates for absolute free energies in atomistic peptides and proteins
RM Donovan-Maiye, CJ Langmead, DM Zuckerman
Journal of chemical theory and computation 14 (1), 426-443, 2018
42018
O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE
CC Funk, MA Richards, P Shannon, R Donovan-Maiye, N Rappaport, ...
Alzheimer's & Dementia 14 (7S_Part_19), P1014-P1015, 2018
2018
A novel conditional model of cell organization: building an integrated cell
GR Johnson, R Donovan-Maiye, MM Maleckar, CD Williams
INTEGRATIVE AND COMPARATIVE BIOLOGY 58, E109-E109, 2018
2018
Efficient sampling in stochastic biological models
R Donovan-Maiye
University of Pittsburgh, 2016
2016
Quantization of Constrained Systems
RM Donovan
Reed College, 2004
2004
Enhancing generative perturbation models with LLM-informed gene embeddings
K Märtens, R Donovan-Maiye, J Ferkinghoff-Borg
ICLR 2024 Workshop on Machine Learning for Genomics Explorations, 0
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Články 1–20