Benjamin Vernot
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
BJ O’Roak, L Vives, S Girirajan, E Karakoc, N Krumm, BP Coe, R Levy, ...
Nature 485 (7397), 246-250, 2012
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
Resurrecting surviving Neandertal lineages from modern human genomes
B Vernot, JM Akey
Science 343 (6174), 1017-1021, 2014
A high-coverage Neandertal genome from Vindija Cave in Croatia
K Prüfer, C De Filippo, S Grote, F Mafessoni, P Korleviæ, M Hajdinjak, ...
Science 358 (6363), 655-658, 2017
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
B Vernot, S Tucci, J Kelso, JG Schraiber, AB Wolf, RM Gittelman, ...
Science 352 (6282), 235-239, 2016
The genome of the offspring of a Neanderthal mother and a Denisovan father
V Slon, F Mafessoni, B Vernot, C De Filippo, S Grote, B Viola, M Hajdinjak, ...
Nature 561 (7721), 113-116, 2018
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
AB Stergachis, S Neph, A Reynolds, R Humbert, B Miller, SL Paige, ...
Cell 154 (4), 888-903, 2013
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers
J Lachance, B Vernot, CC Elbers, B Ferwerda, A Froment, JM Bodo, ...
Cell 150 (3), 457-469, 2012
The phenotypic legacy of admixture between modern humans and Neandertals
CN Simonti, B Vernot, L Bastarache, E Bottinger, DS Carrell, RL Chisholm, ...
Science 351 (6274), 737-741, 2016
A hybrid micro-macroevolutionary approach to gene tree reconstruction
D Durand, BV Halldórsson, B Vernot
Journal of Computational Biology 13 (2), 320-335, 2006
Exonic transcription factor binding directs codon choice and affects protein evolution
AB Stergachis, E Haugen, A Shafer, W Fu, B Vernot, A Reynolds, ...
Science 342 (6164), 1367-1372, 2013
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
M Stolzer, H Lai, M Xu, D Sathaye, B Vernot, D Durand
Bioinformatics 28 (18), i409-i415, 2012
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ...
Cell reports 8 (6), 2015-2030, 2014
Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development
F Mora-Bermúdez, F Badsha, S Kanton, JG Camp, B Vernot, K Köhler, ...
Elife 5, e18683, 2016
Reconciliation with non-binary species trees
B Vernot, M Stolzer, A Goldman, D Durand
Journal of computational biology 15 (8), 981-1006, 2008
Archaic hominin admixture facilitated adaptation to out-of-Africa environments
RM Gittelman, JG Schraiber, B Vernot, C Mikacenic, MM Wurfel, JM Akey
Current Biology 26 (24), 3375-3382, 2016
Limits of long-term selection against Neandertal introgression
M Petr, S Pääbo, J Kelso, B Vernot
Proceedings of the National Academy of Sciences 116 (5), 1639-1644, 2019
Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry
M Hajdinjak, F Mafessoni, L Skov, B Vernot, A Hübner, Q Fu, E Essel, ...
Nature 592 (7853), 253-257, 2021
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