| AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models M Varadi, S Anyango, M Deshpande, S Nair, C Natassia, G Yordanova, ... Nucleic acids research 50 (D1), D439-D444, 2022 | 4292 | 2022 |
| PDBe: improved findability of macromolecular structure data in the PDB DR Armstrong, JM Berrisford, MJ Conroy, A Gutmanas, S Anyango, ... Nucleic acids research 48 (D1), D335-D343, 2020 | 152 | 2020 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 75 | 2020 |
| AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences M Varadi, D Bertoni, P Magana, U Paramval, I Pidruchna, ... Nucleic Acids Research 52 (D1), D368-D375, 2024 | 32 | 2024 |
| PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education M Varadi, S Anyango, SD Appasamy, D Armstrong, M Bage, J Berrisford, ... Protein Science 31 (10), e4439, 2022 | 13 | 2022 |
| Comprehensive collection and prediction of ABC transmembrane protein structures in the AI era of structural biology H Tordai, E Suhajda, I Sillitoe, S Nair, M Varadi, T Hegedus International Journal of Molecular Sciences 23 (16), 8877, 2022 | 12 | 2022 |
| PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data S Nair, M Varadi, N Nadzirin, L Pravda, S Anyango, S Mir, J Berrisford, ... Bioinformatics 37 (21), 3950-3952, 2021 | 11 | 2021 |
| 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources M Varadi, S Nair, I Sillitoe, G Tauriello, S Anyango, S Bienert, C Borges, ... GigaScience 11, giac118, 2022 | 10 | 2022 |
| PDB ProtVista: A reusable and open-source sequence feature viewer M Deshpande, M Varadi, T Paysan-Lafosse, S Nair, D Piovesan, S Mir, ... BioRxiv, 2022.07. 22.500790, 2022 | 2 | 2022 |
| PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank IR Kunnakkattu, P Choudhary, L Pravda, N Nadzirin, OS Smart, Q Yuan, ... Journal of Cheminformatics 15 (1), 117, 2023 | | 2023 |
| PDBImages: a command-line tool for automated macromolecular structure visualization A Midlik, S Nair, S Anyango, M Deshpande, D Sehnal, M Varadi, ... Bioinformatics 39 (12), btad744, 2023 | | 2023 |
| Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data SD Appasamy, J Berrisford, R Gaborova, S Nair, S Anyango, S Grudinin, ... Scientific Data 10 (1), 853, 2023 | | 2023 |
| Identifying Protein Conformational States in the PDB and Comparison to AlphaFold2 Predictions JIJ Ellaway, S Anyango, S Nair, HA Zaki, N Nadzirin, HR Powell, ... bioRxiv, 2023.07. 13.545008, 2023 | | 2023 |
| High-accuracy protein structure models in AlphaFold DB M Varadi, M Deshpande, S Nair, S Anyango, D Bertoni, S Velankar Acta Crystallographica Section A: Foundations and Advances 78, a436-a436, 2022 | | 2022 |
| PDBe: improved findability of macromolecularstructure data in the PDB A Clark, DR Armstrong, J Berrisford, M Conroy, A Gutmanas, S Anyango, ... Oxford University Press, 2019 | | 2019 |
