| De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ... Science 373 (6555), 655-662, 2021 | 398 | 2021 |
| MaizeGDB 2018: the maize multi-genome genetics and genomics database JL Portwood, MR Woodhouse, EK Cannon, JM Gardiner, LC Harper, ... Nucleic acids research 47 (D1), D1146-D1154, 2019 | 282 | 2019 |
| MaizeGDB update: new tools, data and interface for the maize model organism database CM Andorf, EK Cannon, JL Portwood, JM Gardiner, LC Harper, ... Nucleic acids research 44 (D1), D1195-D1201, 2016 | 220 | 2016 |
| The maize W22 genome provides a foundation for functional genomics and transposon biology NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ... Nature genetics 50 (9), 1282-1288, 2018 | 209 | 2018 |
| Technological advances in maize breeding: past, present and future C Andorf, WD Beavis, M Hufford, S Smith, WP Suza, K Wang, ... Theoretical and applied genetics 132, 817-849, 2019 | 154 | 2019 |
| A pan-genomic approach to genome databases using maize as a model system MR Woodhouse, EK Cannon, JL Portwood, LC Harper, JM Gardiner, ... BMC plant biology 21, 1-10, 2021 | 146 | 2021 |
| Maize GO annotation—methods, evaluation, and review (maize‐GAMER) K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill Plant direct 2 (4), e00052, 2018 | 110 | 2018 |
| The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps CM Andorf, CJ Lawrence, LC Harper, ML Schaeffer, DA Campbell, ... Bioinformatics 26 (3), 434-436, 2010 | 108 | 2010 |
| MaizeGDB: curation and outreach go hand-in-hand ML Schaeffer, LC Harper, JM Gardiner, CM Andorf, DA Campbell, ... Database 2011, bar022, 2011 | 95 | 2011 |
| AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ... Database 2018, bay088, 2018 | 83 | 2018 |
| GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations N Manchanda, JL Portwood, MR Woodhouse, AS Seetharam, ... BMC genomics 21 (1), 1-9, 2020 | 76 | 2020 |
| Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning N Zhou, ZD Siegel, S Zarecor, N Lee, DA Campbell, CM Andorf, ... PLoS computational biology 14 (7), e1006337, 2018 | 70 | 2018 |
| G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient … CM Andorf, M Kopylov, D Dobbs, KE Koch, ME Stroupe, CJ Lawrence, ... Journal of Genetics and Genomics 41 (12), 627-647, 2014 | 61 | 2014 |
| MaizeGDB becomes ‘sequence-centric’ TZ Sen, CM Andorf, ML Schaeffer, LC Harper, ME Sparks, J Duvick, ... Database 2009, bap020, 2009 | 56 | 2009 |
| Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes MY Law, KL Childs, MS Campbell, JC Stein, AJ Olson, C Holt, N Panchy, ... Plant physiology 167 (1), 25-39, 2015 | 55 | 2015 |
| Choosing a genome browser for a Model Organism Database: surveying the maize community TZ Sen, LC Harper, ML Schaeffer, CM Andorf, TE Seigfried, DA Campbell, ... Database 2010, baq007, 2010 | 53 | 2010 |
| Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach C Andorf, D Dobbs, V Honavar BMC bioinformatics 8, 1-12, 2007 | 52 | 2007 |
| Information integration and knowledge acquisition from semantically heterogeneous biological data sources D Caragea, J Pathak, J Bao, A Silvescu, C Andorf, D Dobbs, V Honavar International Workshop on Data Integration in the Life Sciences, 175-190, 2005 | 48 | 2005 |
| Haplotype structure in commercial maize breeding programs in relation to key founder lines SM Coffman, MB Hufford, CM Andorf, T Lübberstedt Theoretical and Applied Genetics 133, 547-561, 2020 | 41 | 2020 |
| FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences S Banerjee, P Bhandary, M Woodhouse, TZ Sen, RP Wise, CM Andorf BMC bioinformatics 22, 1-26, 2021 | 36 | 2021 |
Taner Z. SenResearch Scientist, USDA-ARS, GrainGenes / Adj. Prof., UC BerkeleyVerified email at usda.gov
