Timothy Tickle
Timothy Tickle
Head of Scientific Partnerships, Data Sciences Platform, Broad Institute
Verified email at - Homepage
Cited by
Cited by
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ...
Genome biology 13 (9), 1-18, 2012
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ...
Nature methods 12 (10), 902-903, 2015
A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors
DM Bryant, K Johnson, T DiTommaso, T Tickle, MB Couger, ...
Cell reports 18 (3), 762-776, 2017
Multivariable association discovery in population-scale meta-omics studies
H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ...
PLoS computational biology 17 (11), e1009442, 2021
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata
PeerJ 3, e1029, 2015
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ...
Nature 595 (7865), 107-113, 2021
The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation
A Wallrapp, SJ Riesenfeld, PR Burkett, REE Abdulnour, J Nyman, ...
Nature 549 (7672), 351-356, 2017
Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
Y Haberman, TL Tickle, PJ Dexheimer, MO Kim, D Tang, R Karns, ...
The Journal of clinical investigation 124 (8), 3617-3633, 2014
Decoding human fetal liver haematopoiesis
DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ...
Nature 574 (7778), 365-371, 2019
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ...
The ISME journal 8 (7), 1403-1417, 2014
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ...
Nature medicine 26 (5), 792-802, 2020
Computational meta'omics for microbial community studies
N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ...
Molecular systems biology 9 (1), 666, 2013
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ...
Cell host & microbe 17 (3), 385-391, 2015
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes
M Yassour, MY Lim, HS Yun, TL Tickle, J Sung, YM Song, K Lee, ...
Genome medicine 8 (1), 1-14, 2016
STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ...
BioRxiv, 120295, 2017
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ...
Genome biology 16 (1), 1-15, 2015
Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer
D Börnigen, B Ren, R Pickard, J Li, E Ozer, EM Hartmann, W Xiao, ...
Scientific reports 7 (1), 17686, 2017
inferCNV of the Trinity CTAT Project
T Tickle, I Tirosh, C Georgescu, M Brown, B Haas
Klarman Cell Observatory, Broad Institute of MIT and Harvard, 2019
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
B Li, J Gould, Y Yang, S Sarkizova, M Tabaka, O Ashenberg, Y Rosen, ...
Nature methods 17 (8), 793-798, 2020
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