| Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ... Genome biology 13 (9), 1-18, 2012 | 2695 | 2012 |
| MetaPhlAn2 for enhanced metagenomic taxonomic profiling DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ... Nature methods 12 (10), 902-903, 2015 | 1889 | 2015 |
| A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors DM Bryant, K Johnson, T DiTommaso, T Tickle, MB Couger, ... Cell reports 18 (3), 762-776, 2017 | 733 | 2017 |
| Multivariable association discovery in population-scale meta-omics studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS computational biology 17 (11), e1009442, 2021 | 664 | 2021 |
| Compact graphical representation of phylogenetic data and metadata with GraPhlAn F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata PeerJ 3, e1029, 2015 | 658 | 2015 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 528 | 2021 |
| The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation A Wallrapp, SJ Riesenfeld, PR Burkett, REE Abdulnour, J Nyman, ... Nature 549 (7672), 351-356, 2017 | 507 | 2017 |
| Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature Y Haberman, TL Tickle, PJ Dexheimer, MO Kim, D Tang, R Karns, ... The Journal of clinical investigation 124 (8), 3617-3633, 2014 | 493 | 2014 |
| Decoding human fetal liver haematopoiesis DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Nature 574 (7778), 365-371, 2019 | 403 | 2019 |
| Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ... The ISME journal 8 (7), 1403-1417, 2014 | 402 | 2014 |
| A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature medicine 26 (5), 792-802, 2020 | 370 | 2020 |
| Computational meta'omics for microbial community studies N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ... Molecular systems biology 9 (1), 666, 2013 | 365 | 2013 |
| Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ... Cell host & microbe 17 (3), 385-391, 2015 | 288 | 2015 |
| Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes M Yassour, MY Lim, HS Yun, TL Tickle, J Sung, YM Song, K Lee, ... Genome medicine 8 (1), 1-14, 2016 | 260 | 2016 |
| STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ... BioRxiv, 120295, 2017 | 220 | 2017 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 207 | 2021 |
| Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ... Genome biology 16 (1), 1-15, 2015 | 199 | 2015 |
| Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer D Börnigen, B Ren, R Pickard, J Li, E Ozer, EM Hartmann, W Xiao, ... Scientific reports 7 (1), 17686, 2017 | 130 | 2017 |
| inferCNV of the Trinity CTAT Project T Tickle, I Tirosh, C Georgescu, M Brown, B Haas Klarman Cell Observatory, Broad Institute of MIT and Harvard, 2019 | 122 | 2019 |
| Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq B Li, J Gould, Y Yang, S Sarkizova, M Tabaka, O Ashenberg, Y Rosen, ... Nature methods 17 (8), 793-798, 2020 | 121 | 2020 |
