| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2665 | 2022 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 2278 | 2021 |
| MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads M Uliano-Silva, JGRN Ferreira, K Krasheninnikova, G Formenti, L Abueg, ... BMC bioinformatics 24 (1), 288, 2023 | 1194 | 2023 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 674 | 2023 |
| Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs G Formenti, L Abueg, A Brajuka, N Brajuka, C Gallardo-Alba, A Giani, ... Bioinformatics 38 (17), 4214-4216, 2022 | 398 | 2022 |
| Long walk to genomics: History and current approaches to genome sequencing and assembly AM Giani, GR Gallo, L Gianfranceschi, G Formenti Computational and Structural Biotechnology Journal 18, 9-19, 2020 | 345 | 2020 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 277 | 2023 |
| The earth BioGenome project 2020: Starting the clock HA Lewin, S Richards, E Lieberman Aiden, ML Allende, JM Archibald, ... Proceedings of the National Academy of Sciences 119 (4), e2115635118, 2022 | 248 | 2022 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in Ecology & Evolution 37 (3), 197-202, 2022 | 240 | 2022 |
| How genomics can help biodiversity conservation K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ... Trends in genetics 39 (7), 545-559, 2023 | 204 | 2023 |
| Population genomics of the critically endangered kākāpō N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ... Cell Genomics 1 (1), 2021 | 177 | 2021 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 156 | 2022 |
| Complete vertebrate mitogenomes reveal widespread repeats and gene duplications G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ... Genome biology 22 (1), 120, 2021 | 118 | 2021 |
| Reference genome and demographic history of the most endangered marine mammal, the vaquita PA Morin, FI Archer, CD Avila, JR Balacco, YV Bukhman, W Chow, ... Molecular Ecology Resources 21 (4), 1008-1020, 2021 | 100 | 2021 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature methods 19 (6), 687-695, 2022 | 85 | 2022 |
| Evolutionary and biomedical insights from a marmoset diploid genome assembly C Yang, Y Zhou, S Marcus, G Formenti, LA Bergeron, Z Song, X Bi, ... Nature 594 (7862), 227-233, 2021 | 48 | 2021 |
| Widespread false gene gains caused by duplication errors in genome assemblies BJ Ko, C Lee, J Kim, A Rhie, DA Yoo, K Howe, J Wood, S Cho, S Brown, ... Genome Biology 23 (1), 205, 2022 | 44 | 2022 |
| Merfin: improved variant filtering and polishing via k-mer validation G Formenti, A Rhie, BP Walenz, F Thibaud-Nissen, K Shafin, S Koren, ... BioRxiv, 2021.07. 16.452324, 2021 | 44* | 2021 |
| Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories BP Bentley, T Carrasco-Valenzuela, EKS Ramos, H Pawar, ... Proceedings of the National Academy of Sciences 120 (7), e2201076120, 2023 | 36 | 2023 |
| False gene and chromosome losses in genome assemblies caused by GC content variation and repeats J Kim, C Lee, BJ Ko, DA Yoo, S Won, AM Phillippy, O Fedrigo, G Zhang, ... Genome Biology 23 (1), 204, 2022 | 33 | 2022 |
Erich JarvisRockefeller University, Duke University, HHMIVerified email at rockefeller.edu
