| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018 | 604 | 2018 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 219 | 2020 |
| Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome E Pasolli, F De Filippis, IE Mauriello, F Cumbo, AM Walsh, J Leech, ... Nature communications 11 (1), 2610, 2020 | 141 | 2020 |
| Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ... Nature medicine 28 (2), 315-324, 2022 | 68 | 2022 |
| A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity D Wylensek, TCA Hitch, T Riedel, A Afrizal, N Kumar, E Wortmann, T Liu, ... Nature communications 11 (1), 6389, 2020 | 55 | 2020 |
| Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ... Genome biology 20 (1), 1-16, 2019 | 42 | 2019 |
| GIANT: a cytoscape plugin for modular networks F Cumbo, P Paci, D Santoni, L Di Paola, A Giuliani PLoS One 9 (10), e105001, 2014 | 40 | 2014 |
| Classification of large DNA methylation datasets for identifying cancer drivers F Celli, F Cumbo, E Weitschek Big data research 13, 21-28, 2018 | 39 | 2018 |
| Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome Biology 22 (1), 209, 2021 | 38 | 2021 |
| TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas F Cumbo, G Fiscon, S Ceri, M Masseroli, E Weitschek BMC bioinformatics 18, 1-9, 2017 | 35 | 2017 |
| Bioconda: Sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15 (7), 475-476, 2018 | 34 | 2018 |
| Genomic data integration: A case study on next generation sequencing of cancer E Weitschek, F Cumbo, E Cappelli, G Felici 2016 27th International Workshop on Database and Expert Systems Applications …, 2016 | 11 | 2016 |
| IWTomics: testing high-resolution sequence-based ‘Omics’ data at multiple locations and scales MA Cremona, A Pini, F Cumbo, KD Makova, F Chiaromonte, S Vantini Bioinformatics 34 (13), 2289-2291, 2018 | 8 | 2018 |
| Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines M Tomasi, M Dalsass, F Beghini, I Zanella, E Caproni, L Fantappič, ... Vaccines 9 (11), 1356, 2021 | 7 | 2021 |
| Investigating transcription factor synergism in humans F Cumbo, D Vergni, D Santoni https://academic.oup.com/dnaresearch/article/4562529/Investigating …, 2017 | 7 | 2017 |
| OpenGDC: unifying, modeling, integrating cancer genomic data and clinical metadata E Cappelli, F Cumbo, A Bernasconi, A Canakoglu, S Ceri, M Masseroli, ... Applied Sciences 10 (18), 6367, 2020 | 6 | 2020 |
| Classifying big DNA methylation data: a gene-oriented approach E Weitschek, F Cumbo, E Cappelli, G Felici, P Bertolazzi Database and Expert Systems Applications: DEXA 2018 International Workshops …, 2018 | 6 | 2018 |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine 28 (9), 1913-1923, 2022 | 5 | 2022 |
| Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4 A Blanco-Miguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ... bioRxiv, 2022.08. 22.504593, 2022 | 5 | 2022 |
| A brain-inspired hyperdimensional computing approach for classifying massive dna methylation data of cancer F Cumbo, E Cappelli, E Weitschek Algorithms 13 (9), 233, 2020 | 5 | 2020 |
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
