Anvi’o: an advanced analysis and visualization platform for ‘omics data AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ... PeerJ 3, e1319, 2015 | 1300* | 2015 |
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ... Nature microbiology 3 (7), 804-813, 2018 | 417 | 2018 |
Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 233 | 2021 |
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen, AC Schmid, ... Genome biology 21 (1), 1-35, 2020 | 93 | 2020 |
Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics TO Delmont, AM Eren, L Maccario, E Prestat, ÖC Esen, E Pelletier, ... Frontiers in microbiology 6, 358, 2015 | 81 | 2015 |
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics STM Lee, SA Kahn, TO Delmont, A Shaiber, ÖC Esen, NA Hubert, ... Microbiome 5, 1-10, 2017 | 80 | 2017 |
Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 39 | 2021 |
The Wolbachia mobilome in Culex pipiens includes a putative plasmid J Reveillaud, SR Bordenstein, C Cruaud, A Shaiber, ÖC Esen, M Weill, ... Nature communications 10 (1), 1051, 2019 | 37 | 2019 |
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nat Microbiol 3: 804–813 TO Delmont, C Quince, A Shaiber, ÖC Esen, ST Lee, MS Rappé, ... | 35 | 2018 |
FORENSIC: an online platform for fecal source identification A Roguet, ÖC Esen, AM Eren, RJ Newton, SL McLellan Msystems 5 (2), e00869-19, 2020 | 14 | 2020 |
Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus) CJ Yeoman, LM Brutscher, ÖC Esen, F Ibaoglu, C Fowler, AM Eren, ... PeerJ 7, e7548, 2019 | 11 | 2019 |
pyani v0. 2.8: average nucleotide identity (ANI) and related measures for whole genome comparisons L Pritchard, P Cock, Ö Esen | 7 | 2019 |
Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ... Nature Microbiology 3 (8), 963-963, 2018 | 7 | 2018 |
The global biogeography of amino acid variants within a single SAR11 population is governed by natural selection TO Delmont, E Kiefl, O Kilinc, ÖC Esen, I Uysal, MS Rappé, S Giovannoni, ... bioRxiv, 170639, 2017 | 7 | 2017 |
FORENSIC: an online platform for fecal source identification. mSystems 5: e00869-19 A Roguet, ÖC Esen, AM Eren, RJ Newton, SL McLellan | 2 | 2020 |
FORENSIC: an Online Platform for Fecal Source Identification R Adélaïde, ÖC Esen, EA Murat, RJ Newton, SL McLellan MSystems, 2020 | | 2020 |
Pyani: Whole-genome classification using Average Nucleotide Identity L Pritchard, B Harrington, P Cock, R Davey, N Waters, B Brankovics, ... | | 2015 |