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Jeff Nivala
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Molecular digital data storage using DNA
L Ceze, J Nivala, K Strauss
Nature Reviews Genetics 20 (8), 456-466, 2019
4362019
CRISPR–Cas encoding of a digital movie into the genomes of a population of living bacteria
SL Shipman, J Nivala, JD Macklis, GM Church
Nature 547 (7663), 345-349, 2017
3832017
Unfoldase-mediated protein translocation through an α-hemolysin nanopore
J Nivala, DB Marks, M Akeson
Nature biotechnology 31 (3), 247-250, 2013
3692013
Molecular recordings by directed CRISPR spacer acquisition
SL Shipman, J Nivala, JD Macklis, GM Church
Science 353 (6298), aaf1175, 2016
2432016
Discrimination among protein variants using an unfoldase-coupled nanopore
J Nivala, L Mulroney, G Li, J Schreiber, M Akeson
ACS nano 8 (12), 12365-12375, 2014
1232014
Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array
PB Stranges, M Palla, S Kalachikov, J Nivala, M Dorwart, S Kumar, ...
Proceedings of the National Academy of Sciences 113 (44), E6749-E6756, 2016
642016
Reversible thrombin detection by aptamer functionalized STING sensors
P Actis, A Rogers, J Nivala, B Vilozny, RA Seger, O Jejelowo, ...
Biosensors and Bioelectronics 26 (11), 4503-4507, 2011
622011
Synthetic DNA applications in information technology
LC Meiser, BH Nguyen, YJ Chen, J Nivala, K Strauss, L Ceze, RN Grass
Nature communications 13 (1), 352, 2022
582022
Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures
K Doroschak, K Zhang, M Queen, A Mandyam, K Strauss, L Ceze, ...
Nature communications 11 (1), 5454, 2020
362020
Multiplexed direct detection of barcoded protein reporters on a nanopore array
N Cardozo, K Zhang, K Doroschak, A Nguyen, Z Siddiqui, N Bogard, ...
Nature biotechnology 40 (1), 42-46, 2022
332022
Recording gene expression order in DNA by CRISPR addition of retron barcodes
S Bhattarai-Kline, SK Lear, CB Fishman, SC Lopez, ER Lockshin, ...
Nature 608 (7921), 217-225, 2022
292022
Improvement of a potential anthrax therapeutic by computational protein design
SJ Wu, CB Eiben, JH Carra, I Huang, D Zong, P Liu, CT Wu, J Nivala, ...
Journal of Biological Chemistry 286 (37), 32586-32592, 2011
222011
Spontaneous CRISPR loci generation in vivo by non-canonical spacer integration
J Nivala, SL Shipman, GM Church
Nature microbiology 3 (3), 310-318, 2018
212018
De novo design of high-affinity protein binders to bioactive helical peptides
SV Torres, PJY Leung, ID Lutz, P Venkatesh, JL Watson, F Hink, ...
Biorxiv, 2022.12. 10.519862, 2022
162022
Design of stimulus-responsive two-state hinge proteins
F Praetorius, PJY Leung, MH Tessmer, A Broerman, C Demakis, ...
Science 381 (6659), 754-760, 2023
142023
Herding cats: Label-based approaches in protein translocation through nanopore sensors for single-molecule protein sequence analysis
K Motone, N Cardozo, J Nivala
Iscience 24 (9), 2021
142021
Multiplex single-molecule kinetics of nanopore-coupled polymerases
M Palla, S Punthambaker, B Stranges, F Vigneault, J Nivala, D Wiegand, ...
Acs Nano 15 (1), 489-502, 2020
122020
Not if but when nanopore protein sequencing meets single-cell proteomics
K Motone, J Nivala
Nature Methods 20 (3), 336-338, 2023
102023
De novo design of high-affinity binders of bioactive helical peptides
S Vázquez Torres, PJY Leung, P Venkatesh, ID Lutz, F Hink, HH Huynh, ...
Nature 626 (7998), 435-442, 2024
82024
A nanopore interface for higher bandwidth DNA computing
K Zhang, YJ Chen, D Wilde, K Doroschak, K Strauss, L Ceze, G Seelig, ...
Nature Communications 13 (1), 4904, 2022
82022
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