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Ron Dror
Ron Dror
Verified email at stanford.edu - Homepage
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Year
Improved side‐chain torsion potentials for the Amber ff99SB protein force field
K Lindorff‐Larsen, S Piana, K Palmo, P Maragakis, JL Klepeis, RO Dror, ...
Proteins: Structure, Function, and Bioinformatics 78 (8), 1950-1958, 2010
58522010
Scalable algorithms for molecular dynamics simulations on commodity clusters
KJ Bowers, E Chow, H Xu, RO Dror, MP Eastwood, BA Gregersen, ...
Proceedings of the 2006 ACM/IEEE Conference on Supercomputing, 84-es, 2006
33952006
Molecular dynamics simulation for all
SA Hollingsworth, RO Dror
Neuron 99 (6), 1129-1143, 2018
22172018
How fast-folding proteins fold
K Lindorff-Larsen, S Piana, RO Dror, DE Shaw
Science 334 (6055), 517-520, 2011
21102011
Atomic-level characterization of the structural dynamics of proteins
DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ...
Science 330 (6002), 341-346, 2010
20862010
Biomolecular simulation: a computational microscope for molecular biology
RO Dror, RM Dirks, JP Grossman, H Xu, DE Shaw
Annual review of biophysics 41 (1), 429-452, 2012
12872012
Anton, a special-purpose machine for molecular dynamics simulation
DE Shaw, MM Deneroff, RO Dror, JS Kuskin, RH Larson, JK Salmon, ...
Communications of the ACM 51 (7), 91-97, 2008
9882008
Long-timescale molecular dynamics simulations of protein structure and function
JL Klepeis, K Lindorff-Larsen, RO Dror, DE Shaw
Current opinion in structural biology 19 (2), 120-127, 2009
9512009
Structural insights into µ-opioid receptor activation
W Huang, A Manglik, AJ Venkatakrishnan, T Laeremans, EN Feinberg, ...
Nature 524 (7565), 315-321, 2015
9362015
Structure and dynamics of the M3 muscarinic acetylcholine receptor
AC Kruse, J Hu, AC Pan, DH Arlow, DM Rosenbaum, E Rosemond, ...
Nature 482 (7386), 552-556, 2012
9322012
Structure and function of an irreversible agonist-β2 adrenoceptor complex
DM Rosenbaum, C Zhang, JA Lyons, R Holl, D Aragao, DH Arlow, ...
Nature 469 (7329), 236-240, 2011
9112011
The dynamic process of β2-adrenergic receptor activation
R Nygaard, Y Zou, RO Dror, TJ Mildorf, DH Arlow, A Manglik, AC Pan, ...
Cell 152 (3), 532-542, 2013
9072013
Pathway and mechanism of drug binding to G-protein-coupled receptors
RO Dror, AC Pan, DH Arlow, DW Borhani, P Maragakis, Y Shan, H Xu, ...
Proceedings of the National Academy of Sciences 108 (32), 13118-13123, 2011
8372011
Systematic validation of protein force fields against experimental data
K Lindorff-Larsen, P Maragakis, S Piana, MP Eastwood, RO Dror, ...
PloS one 7 (2), e32131, 2012
7882012
GPCR dynamics: structures in motion
NR Latorraca, AJ Venkatakrishnan, RO Dror
Chemical reviews 117 (1), 139-155, 2017
7862017
Anton 2: raising the bar for performance and programmability in a special-purpose molecular dynamics supercomputer
DE Shaw, JP Grossman, JA Bank, B Batson, JA Butts, JC Chao, ...
SC'14: Proceedings of the International Conference for High Performance …, 2014
7412014
Millisecond-scale molecular dynamics simulations on Anton
DE Shaw, RO Dror, JK Salmon, JP Grossman, KM Mackenzie, JA Bank, ...
Proceedings of the conference on high performance computing networking …, 2009
6942009
How does a drug molecule find its target binding site?
Y Shan, ET Kim, MP Eastwood, RO Dror, MA Seeliger, DE Shaw
Journal of the American Chemical Society 133 (24), 9181-9183, 2011
6922011
Structure of the µ-opioid receptor–Gi protein complex
A Koehl, H Hu, S Maeda, Y Zhang, Q Qu, JM Paggi, NR Latorraca, ...
Nature 558 (7711), 547-552, 2018
6642018
Mechanism of voltage gating in potassium channels
MØ Jensen, V Jogini, DW Borhani, AE Leffler, RO Dror, DE Shaw
Science 336 (6078), 229-233, 2012
6592012
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