| Characterizing transcriptional regulatory sequences in coronaviruses and their role in recombination Y Yang, W Yan, AB Hall, X Jiang Molecular Biology and Evolution 38 (4), 1241-1248, 2021 | 57 | 2021 |
| The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope T Qiu, J Qiu, J Feng, D Wu, Y Yang, K Tang, Z Cao, R Zhu Briefings in Bioinformatics 18 (1), 125-136, 2017 | 46 | 2017 |
| The evolution pathway of ammonia-oxidizing archaea shaped by major geological events Y Yang, C Zhang, TM Lenton, X Yan, M Zhu, M Zhou, J Tao, TJ Phelps, ... Molecular Biology and Evolution 38 (9), 3637-3648, 2021 | 33 | 2021 |
| The taxonomic distribution of histamine-secreting bacteria in the human gut microbiome Z Mou, Y Yang, AB Hall, X Jiang BMC genomics 22, 1-11, 2021 | 26 | 2021 |
| CE-BLAST makes it possible to compute antigenic similarity for newly emerging pathogens T Qiu, Y Yang, J Qiu, Y Huang, T Xu, H Xiao, D Wu, Q Zhang, C Zhou, ... Nature communications 9 (1), 1772, 2018 | 26 | 2018 |
| Identification of toxic pyrrolizidine alkaloids and their common hepatotoxicity mechanism X Yan, H Kang, J Feng, Y Yang, K Tang, R Zhu, L Yang, Z Wang, Z Cao International Journal of Molecular Sciences 17 (3), 318, 2016 | 25 | 2016 |
| Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2 J Qiu, T Qiu, Y Yang, D Wu, Z Cao Scientific reports 6 (1), 31156, 2016 | 19 | 2016 |
| Proteochemometric modeling of the antigen-antibody interaction: new fingerprints for antigen, antibody and epitope-paratope interaction T Qiu, H Xiao, Q Zhang, J Qiu, Y Yang, D Wu, Z Cao, R Zhu PLoS One 10 (4), e0122416, 2015 | 15 | 2015 |
| Predicting the mutating distribution at antigenic sites of the influenza virus H Xu, Y Yang, S Wang, R Zhu, T Qiu, J Qiu, Q Zhang, L Jin, Y He, K Tang, ... Scientific Reports 6 (1), 20239, 2016 | 14 | 2016 |
| H-RACS: a handy tool to rank anti-cancer synergistic drugs X Yan, Y Yang, Z Chen, Z Yin, Z Deng, T Qiu, K Tang, Z Cao Aging (Albany NY) 12 (21), 21504, 2020 | 11 | 2020 |
| Wastewater surveillance uncovers regional diversity and dynamics of SARS-CoV-2 variants across nine states in the USA RS Fontenele, Y Yang, EM Driver, A Magge, S Kraberger, JM Custer, ... Science of the Total Environment 877, 162862, 2023 | 8 | 2023 |
| BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen B Hall, S Levy, K Dufault-Thompson, G Arp, A Zhong, GM Ndjite, A Weiss, ... Nature Microbiology, 1-12, 2024 | 4 | 2024 |
| A benchmark dataset of protein antigens for antigenicity measurement T Qiu, J Qiu, Y Yang, L Zhang, T Mao, X Zhang, J Xu, Z Cao Scientific Data 7 (1), 212, 2020 | 4 | 2020 |
| Discovery of the gut microbial enzyme responsible for bilirubin reduction to urobilinogen B Hall, S Levy, K Dufault-Thompson, GM Ndjite, A Weiss, D Braccia, ... BioRxiv, 2023 | 2 | 2023 |
| Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments Y Zheng, B Wang, P Gao, Y Yang, B Xu, X Su, D Ning, Q Tao, Q Li, F Zhao, ... The ISME Journal 18 (1), wrad002, 2024 | 1 | 2024 |
| Deciphering Phage-Host Specificity Based on the Association of Phage Depolymerases and Bacterial Surface Glycan with Deep Learning Y Yang, K Dufault-Thompson, W Yan, T Cai, L Xie, X Jiang bioRxiv, 2023 | 1 | 2023 |
| Putative host-derived insertions in the genomes of circulating SARS-CoV-2 variants Y Yang, K Dufault-Thompson, R Salgado Fontenele, X Jiang Msystems 7 (3), e00179-22, 2022 | 1 | 2022 |
| Study of synergistic mechanism in the combination ofberberine and evodiamine from the perspective of miRNA Z Yin, Z Cao, X Yan, Y Yang, Z Sheng Chinese Pharmacological Bulletin, 772-780, 2017 | 1 | 2017 |
| Large-scale genomic survey with deep learning-based method reveals strain-level phage specificity determinants Y Yang, K Dufault-Thompson, W Yan, T Cai, L Xie, X Jiang GigaScience 13, giae017, 2024 | | 2024 |
| Evolink: a phylogenetic approach for rapid identification of genotype–phenotype associations in large-scale microbial multispecies data Y Yang, X Jiang Bioinformatics 39 (5), btad215, 2023 | | 2023 |
