| Amyloid oligomers: A joint experimental/computational perspective on Alzheimer’s disease, Parkinson’s disease, type II diabetes, and amyotrophic lateral sclerosis PH Nguyen, A Ramamoorthy, BR Sahoo, J Zheng, P Faller, JE Straub, ... Chemical reviews 121 (4), 2545-2647, 2021 | 318 | 2021 |
| Two-photon polarization microscopy reveals protein structure and function J Lazar, A Bondar, S Timr, SJ Firestein Nature Methods 8 (8), 684, 2011 | 87 | 2011 |
| Calcium ions in aqueous solutions: Accurate force field description aided by ab initio molecular dynamics and neutron scattering T Martinek, E Duboué-Dijon, Š Timr, PE Mason, K Baxová, HE Fischer, ... The Journal of chemical physics 148 (22), 222813, 2018 | 78 | 2018 |
| Stability effect of quinary interactions reversed by single point mutations D Gnutt, S Timr, J Ahlers, B König, E Manderfeld, M Heyden, F Sterpone, ... Journal of the American Chemical Society 141 (11), 4660-4669, 2019 | 47 | 2019 |
| Transmembrane potential modeling: comparison between methods of constant electric field and ion imbalance J Melcr, D Bonhenry, S Timr, P Jungwirth Journal of Chemical Theory and Computation 12 (5), 2418-2425, 2016 | 36 | 2016 |
| Accurate determination of the orientational distribution of a fluorescent molecule in a phospholipid membrane S Timr, A Bondar, L Cwiklik, M Stefl, M Hof, M Vazdar, J Lazar, ... The Journal of Physical Chemistry B 118 (4), 855-863, 2014 | 35 | 2014 |
| Modelling lipid systems in fluid with Lattice Boltzmann Molecular Dynamics simulations and hydrodynamics A F Brandner, S Timr, S Melchionna, P Derreumaux, M Baaden, ... Scientific reports 9 (1), 1-14, 2019 | 26 | 2019 |
| The unfolding journey of superoxide dismutase 1 barrels under crowding: atomistic simulations shed light on intermediate states and their interactions with Crowders S Timr, D Gnutt, S Ebbinghaus, F Sterpone The Journal of Physical Chemistry Letters 11 (10), 4206-4212, 2020 | 20 | 2020 |
| Calcium Sensing by Recoverin: Effect of Protein Conformation on Ion Affinity S Timr, J Kadlec, P Srb, OHS Ollila, P Jungwirth The Journal of Physical Chemistry Letters 9, 1613-1619, 2018 | 15 | 2018 |
| Membrane Binding of Recoverin: From Mechanistic Understanding to Biological Functionality S Timr, R Pleskot, J Kadlec, M Kohagen, A Magarkar, P Jungwirth ACS Central Science 3 (8), 868-874, 2017 | 14 | 2017 |
| Stabilizing or destabilizing: simulations of chymotrypsin inhibitor 2 under crowding reveal existence of a crossover temperature S Timr, F Sterpone The Journal of Physical Chemistry Letters 12 (6), 1741-1746, 2021 | 13 | 2021 |
| Sequestration of Proteins in Stress Granules Relies on the In-Cell but Not the In Vitro Folding Stability N Samanta, SS Ribeiro, M Becker, E Laborie, R Pollak, S Timr, ... Journal of the American Chemical Society 143 (47), 19909-19918, 2021 | 11 | 2021 |
| Nonlinear optical properties of fluorescent dyes allow for accurate determination of their molecular orientations in phospholipid membranes S Timr, J Brabec, A Bondar, T Ryba, M Zelezny, J Lazar, P Jungwirth The Journal of Physical Chemistry B 119 (30), 9706-9716, 2015 | 11 | 2015 |
| Protein thermal stability S Timr, D Madern, F Sterpone Progress in Molecular Biology and Translational Science 170, 239-272, 2020 | 8 | 2020 |
| Oxidation of cholesterol does not alter significantly its uptake into high-density lipoprotein particles T Karilainen, S Timr, I Vattulainen, P Jungwirth The Journal of Physical Chemistry B 119 (13), 4594-4600, 2015 | 6 | 2015 |
| Expertomica Cells: analysis of cell monolayer development T Levitner, Š Timr, D Štys Bioinformatics 26 (2), 278-279, 2010 | 4 | 2010 |
| Diffusive Dynamics of Bacterial Proteome as a Proxy of Cell Death D Di Bari, S Timr, M Guiral, MT Giudici-Orticoni, T Seydel, C Beck, ... ACS Central Science, 2023 | 2 | 2023 |
| Simulation of processes in cellular membranes Š Timr Charles University, 2013 | 2 | 2013 |
| Evolution of large Aβ16–22 aggregates at atomic details and potential of mean force associated to peptide unbinding and fragmentation events A Iorio, Š Timr, L Chiodo, P Derreumaux, F Sterpone Proteins: Structure, Function, and Bioinformatics, 2023 | | 2023 |
| Optimized OPEP Force Field for Simulation of Crowded Protein Solutions S Timr, S Melchionna, P Derreumaux, F Sterpone The Journal of Physical Chemistry B, 2023 | | 2023 |
