Štěpán Timr
Štěpán Timr
J. Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences
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Cited by
Cited by
Amyloid oligomers: A joint experimental/computational perspective on Alzheimer’s disease, Parkinson’s disease, type II diabetes, and amyotrophic lateral sclerosis
PH Nguyen, A Ramamoorthy, BR Sahoo, J Zheng, P Faller, JE Straub, ...
Chemical reviews 121 (4), 2545-2647, 2021
Two-photon polarization microscopy reveals protein structure and function
J Lazar, A Bondar, S Timr, SJ Firestein
Nature Methods 8 (8), 684, 2011
Calcium ions in aqueous solutions: Accurate force field description aided by ab initio molecular dynamics and neutron scattering
T Martinek, E Duboué-Dijon, Š Timr, PE Mason, K Baxová, HE Fischer, ...
The Journal of chemical physics 148 (22), 2018
Stability effect of quinary interactions reversed by single point mutations
D Gnutt, S Timr, J Ahlers, B König, E Manderfeld, M Heyden, F Sterpone, ...
Journal of the American Chemical Society 141 (11), 4660-4669, 2019
Transmembrane potential modeling: comparison between methods of constant electric field and ion imbalance
J Melcr, D Bonhenry, S Timr, P Jungwirth
Journal of Chemical Theory and Computation 12 (5), 2418-2425, 2016
Accurate determination of the orientational distribution of a fluorescent molecule in a phospholipid membrane
S Timr, A Bondar, L Cwiklik, M Stefl, M Hof, M Vazdar, J Lazar, ...
The Journal of Physical Chemistry B 118 (4), 855-863, 2014
Modelling lipid systems in fluid with Lattice Boltzmann Molecular Dynamics simulations and hydrodynamics
A F. Brandner, S Timr, S Melchionna, P Derreumaux, M Baaden, ...
Scientific reports 9 (1), 16450, 2019
The unfolding journey of superoxide dismutase 1 barrels under crowding: atomistic simulations shed light on intermediate states and their interactions with Crowders
S Timr, D Gnutt, S Ebbinghaus, F Sterpone
The Journal of Physical Chemistry Letters 11 (10), 4206-4212, 2020
Calcium Sensing by Recoverin: Effect of Protein Conformation on Ion Affinity
S Timr, J Kadlec, P Srb, OHS Ollila, P Jungwirth
The Journal of Physical Chemistry Letters 9, 1613-1619, 2018
Membrane Binding of Recoverin: From Mechanistic Understanding to Biological Functionality
S Timr, R Pleskot, J Kadlec, M Kohagen, A Magarkar, P Jungwirth
ACS Central Science 3 (8), 868-874, 2017
Sequestration of Proteins in Stress Granules Relies on the In-Cell but Not the In Vitro Folding Stability
N Samanta, SS Ribeiro, M Becker, E Laborie, R Pollak, S Timr, ...
Journal of the American Chemical Society 143 (47), 19909-19918, 2021
Stabilizing or destabilizing: Simulations of chymotrypsin inhibitor 2 under crowding reveal existence of a crossover temperature
S Timr, F Sterpone
The Journal of Physical Chemistry Letters 12 (6), 1741-1746, 2021
Protein thermal stability
S Timr, D Madern, F Sterpone
Progress in Molecular Biology and Translational Science 170, 239-272, 2020
Nonlinear optical properties of fluorescent dyes allow for accurate determination of their molecular orientations in phospholipid membranes
S Timr, J Brabec, A Bondar, T Ryba, M Zelezny, J Lazar, P Jungwirth
The Journal of Physical Chemistry B 119 (30), 9706-9716, 2015
Oxidation of cholesterol does not alter significantly its uptake into high-density lipoprotein particles
T Karilainen, S Timr, I Vattulainen, P Jungwirth
The Journal of Physical Chemistry B 119 (13), 4594-4600, 2015
Diffusive dynamics of bacterial proteome as a proxy of cell death
D Di Bari, S Timr, M Guiral, MT Giudici-Orticoni, T Seydel, C Beck, ...
ACS Central Science 9 (1), 93-102, 2023
Expertomica Cells: analysis of cell monolayer development
T Levitner, Š Timr, D Štys
Bioinformatics 26 (2), 278-279, 2010
Quantitative linear dichroism imaging of molecular processes in living cells made simple by open software tools
A Bondar, O Rybakova, J Melcr, J Dohnálek, P Khoroshyy, O Ticháček, ...
Communications biology 4 (1), 189, 2021
Simulation of processes in cellular membranes
Š Timr
Charles University, 2013
Optimized OPEP Force Field for Simulation of Crowded Protein Solutions
S Timr, S Melchionna, P Derreumaux, F Sterpone
The Journal of Physical Chemistry B 127 (16), 3616-3623, 2023
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