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| The global phosphorylation landscape of SARS-CoV-2 infection M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ... Cell 182 (3), 685-712. e19, 2020 | 891 | 2020 |
| Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation DL Swaney, P Beltrao, L Starita, A Guo, J Rush, S Fields, NJ Krogan, ... Nature methods 10 (7), 676-682, 2013 | 685 | 2013 |
| Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 635 | 2020 |
| Value of using multiple proteases for large-scale mass spectrometry-based proteomics DL Swaney, CD Wenger, JJ Coon Journal of proteome research 9 (3), 1323-1329, 2010 | 528 | 2010 |
| Systematic functional prioritization of protein posttranslational modifications P Beltrao, V Albanèse, LR Kenner, DL Swaney, A Burlingame, J Villén, ... Cell 150 (2), 413-425, 2012 | 445 | 2012 |
| Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors DL Swaney, GC McAlister, M Wirtala, JC Schwartz, JEP Syka, JJ Coon Analytical chemistry 79 (2), 477-485, 2007 | 431 | 2007 |
| Evolution of enhanced innate immune evasion by SARS-CoV-2 LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ... Nature 602 (7897), 487-495, 2022 | 384 | 2022 |
| An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike M Schoof, B Faust, RA Saunders, S Sangwan, V Rezelj, N Hoppe, ... Science 370 (6523), 1473-1479, 2020 | 384 | 2020 |
| Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics N Khidekel, SB Ficarro, PM Clark, MC Bryan, DL Swaney, JE Rexach, ... Nature chemical biology 3 (6), 339-348, 2007 | 381 | 2007 |
| Decision tree–driven tandem mass spectrometry for shotgun proteomics DL Swaney, GC McAlister, JJ Coon Nature methods 5 (11), 959-964, 2008 | 375 | 2008 |
| The functional landscape of the human phosphoproteome D Ochoa, AF Jarnuczak, C Viéitez, M Gehre, M Soucheray, A Mateus, ... Nature biotechnology 38 (3), 365-373, 2020 | 334 | 2020 |
| Proteomic and phosphoproteomic comparison of human ES and iPS cells DH Phanstiel, J Brumbaugh, CD Wenger, S Tian, MD Probasco, DJ Bailey, ... Nature methods 8 (10), 821-827, 2011 | 313 | 2011 |
| Comparative flavivirus-host protein interaction mapping reveals mechanisms of dengue and Zika virus pathogenesis PS Shah, N Link, GM Jang, PP Sharp, T Zhu, DL Swaney, JR Johnson, ... Cell 175 (7), 1931-1945. e18, 2018 | 284 | 2018 |
| Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry DL Swaney, CD Wenger, JA Thomson, JJ Coon Proceedings of the National Academy of Sciences 106 (4), 995-1000, 2009 | 223 | 2009 |
| Phosphoproteomics for the masses PA Grimsrud, DL Swaney, CD Wenger, NA Beauchene, JJ Coon ACS chemical biology 5 (1), 105-119, 2010 | 209 | 2010 |
| Chaperone-mediated autophagy prevents collapse of the neuronal metastable proteome M Bourdenx, A Martín-Segura, A Scrivo, JA Rodriguez-Navarro, ... Cell 184 (10), 2696-2714. e25, 2021 | 200 | 2021 |
| Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures T Pekar Second, JD Blethrow, JC Schwartz, GE Merrihew, MJ MacCoss, ... Analytical chemistry 81 (18), 7757-7765, 2009 | 193 | 2009 |
| A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer GC McAlister, WT Berggren, J Griep-Raming, S Horning, A Makarov, ... Journal of proteome research 7 (8), 3127-3136, 2008 | 163 | 2008 |
| Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration TE Tracy, J Madero-Pérez, DL Swaney, TS Chang, M Moritz, C Konrad, ... Cell 185 (4), 712-728. e14, 2022 | 156 | 2022 |
Nevan KroganUniversity of California-San FranciscoVerified email at ucsf.edu
