| The LOTUS initiative for open knowledge management in natural products research A Rutz, M Sorokina, J Galgonek, D Mietchen, E Willighagen, A Gaudry, ... Elife 11, e70780, 2022 | 112 | 2022 |
| Amino acid interaction (INTAA) web server J Galgonek, J Vymětal, D Jakubec, J Vondrášek Nucleic Acids Research 45 (W1), W388-W392, 2017 | 37 | 2017 |
| Sachem: a chemical cartridge for high-performance substructure search M Kratochvíl, J Vondrášek, J Galgonek Journal of cheminformatics 10, 1-11, 2018 | 29 | 2018 |
| The LOTUS initiative for open natural products research: knowledge management through Wikidata A Rutz, M Sorokina, J Galgonek, D Mietchen, E Willighagen, A Gaudry, ... BioRxiv, 2021.02. 28.433265, 2021 | 23 | 2021 |
| Interoperable chemical structure search service M Kratochvíl, J Vondrášek, J Galgonek Journal of cheminformatics 11, 1-7, 2019 | 18 | 2019 |
| SProt: sphere-based protein structure similarity algorithm J Galgonek, D Hoksza, T Skopal Proteome science 9, 1-12, 2011 | 16 | 2011 |
| Toward Ab Initio Protein Folding: Inherent Secondary Structure Propensity of Short Peptides from the Bioinformatics and Quantum-Chemical Perspective M Culka, J Galgonek, J Vymetal, J Vondrášek, L Rulíšek The Journal of Physical Chemistry B 123 (6), 1215-1227, 2019 | 14 | 2019 |
| Advanced SPARQL querying in small molecule databases J Galgonek, T Hurt, V Michlíková, P Onderka, J Schwarz, J Vondrášek Journal of cheminformatics 8, 1-14, 2016 | 14 | 2016 |
| IDSM ChemWebRDF: SPARQLing small-molecule datasets J Galgonek, J Vondrášek Journal of Cheminformatics 13 (1), 38, 2021 | 12 | 2021 |
| Open natural products research: curation and dissemination of biological occurrences of chemical structures through Wikidata A Rutz, M Sorokina, J Galgonek, D Mietchen, E Willighagen, J Graham, ... bioRxiv 28 (2), 43326, 2021 | 10 | 2021 |
| On InChI and evaluating the quality of cross-reference links J Galgonek, J Vondrášek Journal of cheminformatics 6, 1-15, 2014 | 7 | 2014 |
| Amino Acid Interactions (INTAA) web server v2. 0: a single service for computation of energetics and conservation in biomolecular 3D structures J Vymětal, D Jakubec, J Galgonek, J Vondrášek Nucleic Acids Research 49 (W1), W15-W20, 2021 | 5 | 2021 |
| Computational methods for the description of pharmacologically relevant platinum complexes–molecular structure and bond dissociation M Kokoschka, J Galgonek, J Vondrasek, P Hobza Physical Chemistry Chemical Physics 18 (5), 4051-4062, 2016 | 5 | 2016 |
| Density-based classification of protein structures using iterative TM-score D Hoksza, J Galgonek 2009 IEEE International Conference on Bioinformatics and Biomedicine …, 2009 | 5 | 2009 |
| On the effectiveness of distances measuring protein structure similarity J Galgonek, D Hokzsa 2009 Second International Workshop on Similarity Search and Applications …, 2009 | 5 | 2009 |
| The LOTUS initiative for knowledge sharing in Natural Products research A Rutz, M Sorokina, J Galgonek, D Mietchen, E Willighagen, A Gaudry, ... Planta Medica 87 (15), SL29, 2021 | 3 | 2021 |
| SMILE-A Framework for Semantic Applications. J Galgonek, T Knap, M Krulis, M Necaský OTM Workshops 6428, 53-54, 2010 | 3 | 2010 |
| Alignment-based extension to DDPIn feature extraction D Hoksza, J Galgonek International Journal of Computational Bioscience 1 (1), 79-87, 2010 | 3 | 2010 |
| A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL J Galgonek, J Vondrášek Journal of Cheminformatics 15 (1), 61, 2023 | 2 | 2023 |
| Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web M Musil, A Jezik, M Jankujova, J Stourac, J Galgonek, SM Eyrilmez, ... Computational and Structural Biotechnology Journal 20, 6512-6518, 2022 | 2 | 2022 |
jiri vondrasekInstitute of Organic Chemistry and Biochemistry, Head of BioinformaticsE-mailová adresa ověřena na: uochb.cas.cz
