Aedin Culhane

Cited by

	All	Since 2018
Citations	14145	8217
h-index	49	37
i10-index	74	62

2100

1050

525

1575

19971998199920002001200220032004200520062007200820092010201120122013201420152016201720182019202020212022202398 141 107 113 75 83 65 59 87 134 226 223 337 362 410 495 515 549 582 599 554 694 992 1401 1762 2003 1353

Public access

View all

62 articles

1 article

available

not available

Based on funding mandates

Co-authors

John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
des higginsUniversity College DublinVerified email at ucd.ie
Professor William M. GallagherUCD Conway Institute, University College DublinVerified email at ucd.ie
Levi WaldronCity University of New York Graduate School of Public Health and Health PolicyVerified email at sph.cuny.edu
Matthew SchwedePhysicianVerified email at ucsf.edu
Donal J BrennanUniversity College DublinVerified email at ucd.ie
Michael BirrerProfessor Medicine HMSVerified email at partners.org
Ronny Drapkin, MD, PhDUniversity of Pennsylvania, Perelman School of MedicineVerified email at pennmedicine.upenn.edu
Chen MengBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life SciencesVerified email at tum.de
Amin Moghaddas GholamiTechnische Universität München, Chair for Proteomics and BioanalyticsVerified email at tum.de
Michael J DuffySt Vincent's University Hospital and University College DublinVerified email at ucd.ie
Markus S. SchröderETH ZürichVerified email at biol.ethz.ch
Daniel GusenleitnerMercy BioAnalytics Inc.Verified email at mercybio.com
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Bernhard KusterProfessor for Proteomics and BioanalyticsVerified email at tum.de
Ian B. JefferyVerified email at 4dpharmaplc.com
Darran O'ConnorRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Markus RiesterNovartis Institutes for Biomedical ResearchVerified email at novartis.com
Razvan SultanaBioinformatician, Garvan Institute, Sydney, AustraliaVerified email at garvan.org.au

Aedin Culhane

University of Limerick School of Medicine

Verified email at ul.ie - Homepage

Bioinformatics tumor immunology Multiomics single cell matrix factorization


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The immune landscape of cancer V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ... Immunity 48 (4), 812-830. e14, 2018	3749	2018
Apoptosis: molecular regulation of cell death AJ Hale, CA Smith, LC Sutherland, VEA Stoneman, VL Longthorne, ... European Journal of Biochemistry 236 (1), 1-26, 1996	988	1996
RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites B Sobhian, G Shao, DR Lilli, AC Culhane, LA Moreau, B Xia, ... Science 316 (5828), 1198-1202, 2007	772	2007
Repeatability of published microarray gene expression analyses JPA Ioannidis, DB Allison, CA Ball, I Coulibaly, X Cui, AC Culhane, ... Nature genetics 41 (2), 149-155, 2009	638	2009
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data IB Jeffery, DG Higgins, AC Culhane BMC bioinformatics 7, 1-16, 2006	514	2006
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains Bioinformatics 27 (22), 3206-3208, 2011	397	2011
MADE4: an R package for multivariate analysis of gene expression data AC Culhane, J Thioulouse, G Perrière, DG Higgins Bioinformatics 21 (11), 2789-2790, 2005	388	2005
Dimension reduction techniques for the integrative analysis of multi-omics data C Meng, OA Zeleznik, GG Thallinger, B Kuster, AM Gholami, AC Culhane Briefings in bioinformatics 17 (4), 628-641, 2016	360	2016
A three-gene model to robustly identify breast cancer molecular subtypes B Haibe-Kains, C Desmedt, S Loi, AC Culhane, G Bontempi, ... Journal of the National Cancer Institute 104 (4), 311-325, 2012	350	2012
A multivariate approach to the integration of multi-omics datasets C Meng, B Kuster, AC Culhane, AM Gholami BMC bioinformatics 15, 1-13, 2014	278	2014
Between-group analysis of microarray data AC Culhane, G Perriere, EC Considine, TG Cotter, DG Higgins Bioinformatics 18 (12), 1600-1608, 2002	272	2002
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification MJ Smith, AC Culhane, M Donovan, JC Coffey, BD Barry, MA Kelly, ... British journal of cancer 100 (9), 1452-1464, 2009	226	2009
Taxonomy of breast cancer based on normal cell phenotype predicts outcome S Santagata, A Thakkar, A Ergonul, B Wang, T Woo, R Hu, JC Harrell, ... The Journal of clinical investigation 124 (2), 859-870, 2014	225	2014
Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples M Riester, W Wei, L Waldron, AC Culhane, L Trippa, E Oliva, S Kim, ... Journal of the National Cancer Institute 106 (5), dju048, 2014	204	2014
Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018	190	2018
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis AC Culhane, G Perrière, DG Higgins BMC bioinformatics 4 (1), 1-15, 2003	188	2003
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012	183	2012
Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue DT Chen, A Nasir, A Culhane, C Venkataramu, W Fulp, R Rubio, T Wang, ... Breast cancer research and treatment 119, 335-346, 2010	177	2010
Profiles of genomic instability in high-grade serous ovarian cancer predict treatment outcome ZC Wang, NJ Birkbak, AC Culhane, R Drapkin, A Fatima, R Tian, ... Clinical cancer research 18 (20), 5806-5815, 2012	170	2012
Safety of hydroxychloroquine, alone and in combination with azithromycin, in light of rapid wide-spread use for COVID-19: a multinational, network cohort and self-controlled … JCE Lane, J Weaver, K Kostka, T Duarte-Salles, MTF Abrahao, H Alghoul, ... MedRxiv, 2020	162	2020

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors