| Inferring phylogeny despite incomplete lineage sorting WP Maddison, LL Knowles Systematic biology 55 (1), 21-30, 2006 | 939 | 2006 |
| Statistical phylogeography LL Knowles, WP Maddison Molecular Ecology 11 (12), 2623-2635, 2002 | 800 | 2002 |
| Delimiting species without monophyletic gene trees LL Knowles, BC Carstens Systematic biology 56 (6), 887-895, 2007 | 670 | 2007 |
| STEM: species tree estimation using maximum likelihood for gene trees under coalescence LS Kubatko, BC Carstens, LL Knowles Bioinformatics 25 (7), 971-973, 2009 | 429 | 2009 |
| Statistical phylogeography LL Knowles Annual Review of Ecology, Evolution, and Systematics 40, 593-612, 2009 | 358 | 2009 |
| Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers LL Knowles Molecular Ecology 10 (3), 691-701, 2001 | 355 | 2001 |
| Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers BC Carstens, LL Knowles Systematic Biology 56 (3), 400-411, 2007 | 318 | 2007 |
| Multispecies coalescent delimits structure, not species J Sukumaran, LL Knowles Proceedings of the National Academy of Sciences 114 (7), 1607-1612, 2017 | 299 | 2017 |
| Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses CL Richards, BC Carstens, L Lacey Knowles Journal of Biogeography 34 (11), 1833-1845, 2007 | 278 | 2007 |
| DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE IN APHELOCOMA JAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION … JE McCormack, AJ Zellmer, LL Knowles Evolution: International Journal of Organic Evolution 64 (5), 1231-1244, 2010 | 265 | 2010 |
| The burgeoning field of statistical phylogeography LL Knowles Journal of evolutionary biology 17 (1), 1-10, 2004 | 257 | 2004 |
| TESTS OF PLEISTOCENE SPECIATION IN MONTANE GRASSHOPPERS (GENUS MELANOPLUS) FROM THE SKY ISLANDS OF WESTERN NORTH AMERICA LL Knowles Evolution 54 (4), 1337-1348, 2000 | 238 | 2000 |
| CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS JE McCormack, J Heled, KS Delaney, AT Peterson, LL Knowles Evolution: International Journal of Organic Evolution 65 (1), 184-202, 2011 | 226 | 2011 |
| Shifting distributions and speciation: species divergence during rapid climate change BC Carstens, LL Knowles Molecular Ecology 16 (3), 619-627, 2007 | 191 | 2007 |
| In defence of model‐based inference in phylogeography MA Beaumont, R Nielsen, C Robert, J Hey, O Gaggiotti, L Knowles, ... Molecular ecology 19 (3), 436-446, 2010 | 175 | 2010 |
| Unforeseen consequences of excluding missing data from next-generation sequences: simulation study of RAD sequences H Huang, LL Knowles Systematic biology 65 (3), 357-365, 2016 | 174 | 2016 |
| Coupling genetic and ecological-niche models to examine how past population distributions contribute to divergence LL Knowles, BC Carstens, ML Keat Current Biology 17 (11), 940-946, 2007 | 164 | 2007 |
| Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes LL Knowles Systematic Biology 58 (5), 463-467, 2009 | 163 | 2009 |
| Ecological niche models in phylogeographic studies: applications, advances and precautions DF Alvarado‐Serrano, LL Knowles Molecular Ecology Resources 14 (2), 233-248, 2014 | 158 | 2014 |
| Estimating species trees: practical and theoretical aspects LL Knowles, LS Kubatko John Wiley and Sons, 2011 | 155 | 2011 |
