| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis D Vallenet, A Calteau, M Dubois, P Amours, A Bazin, M Beuvin, L Burlot, ... Nucleic acids research 48 (D1), D579-D589, 2020 | 238 | 2020 |
| PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graph G Gautreau, A Bazin, M Gachet, R Planel, L Burlot, M Dubois, A Perrin, ... PLoS computational biology 16 (3), e1007732, 2020 | 130 | 2020 |
| panRGP: a pangenome-based method to predict genomic islands and explore their diversity A Bazin, G Gautreau, C Médigue, D Vallenet, A Calteau Bioinformatics 36 (Supplement_2), i651-i658, 2020 | 34* | 2020 |
| Construction of a complete set of Neisseria meningitidis mutants and its use for the phenotypic profiling of this human pathogen A Muir, I Gurung, A Cehovin, A Bazin, D Vallenet, V Pelicic Nature communications 11 (1), 5541, 2020 | 13 | 2020 |
| Ancestral genome organization as a diagnosis tool for phylogenomics E Tannier, A Bazin, A Davín, L Guéguen, S Bérard, C Chauve Phylogenetics in the Genomic Era, 2.5: 1--2.5: 19, 2020 | 4 | 2020 |
| PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomes J Mainguy, J Arnoux, G Gautreau, A Bazin, D Vallenet, A Calteau The local pangenome, 2023 | | 2023 |
| From Genomics to Pangenomics: the path to pangenome graphs G Gautreau, A Bazin, J Arnoux The 20th MicroScope anniversary, 2023 | | 2023 |
| Méthodes d'analyse comparative de la variabilité intraspécifique des pangénomes procaryotes A Bazin Université Paris-Saclay, 2022 | | 2022 |
| panModule: detecting conserved modules in the variable regions of a pangenome graph A Bazin, C Medigue, D Vallenet, A Calteau bioRxiv, 2021.12. 06.471380, 2021 | | 2021 |
| PanGBank: exploring GenBank genomes through a resource of pangenome graphs P Amours, A Bazin, G Gautreau, M Dubois, L Burlot, A Calteau, D Vallenet JOBIM 2020 Journées Ouvertes Biologie, Informatique et Mathématiques, 2020 | | 2020 |
| PanFam: a pangenomic workflow for the iterative construction of gene families on thousands of genomes J Arnoux, M Beuvin, A Bazin, A Calteau, D Vallenet JOBIM 2020 Journées Ouvertes Biologie, Informatique et Mathématiques, 2020 | | 2020 |
| Comparative microbial pangenomics to explore mobilome dynamics A Bazin, G Gautreau, C Médigue, A Calteau, D Vallenet JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, 2019 | | 2019 |
| PanGBank: depicting microbial species diversity via PPanGGOLiN G Gautreau, A Bazin, R Planel, M Gachet, M Dubois, L Burlot, A Perrin, ... JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, 2019 | | 2019 |
David VallenetCEA - Genoscope - UMR8030 - LABGeMVerified email at genoscope.cns.fr
