Charles Tapley Hoyt
Charles Tapley Hoyt
Northeastern University
Verified email at - Homepage
Cited by
Cited by
PyKEEN 1.0: A python library for training and evaluating knowledge graph emebddings
M Ali, M Berrendorf, CT Hoyt, L Vermue, S Sharifzadeh, V Tresp, ...
arXiv preprint arXiv:2007.14175, 2020
Bringing light into the dark: A large-scale evaluation of knowledge graph embedding models under a unified framework
M Ali, M Berrendorf, CT Hoyt, L Vermue, M Galkin, S Sharifzadeh, ...
IEEE Transactions on Pattern Analysis and Machine Intelligence 44 (12), 8825 …, 2021
The impact of pathway database choice on statistical enrichment analysis and predictive modeling
S Mubeen, CT Hoyt, A Gemünd, M Hofmann-Apitius, H Fröhlich, ...
Frontiers in genetics 10, 1203, 2019
A review of biomedical datasets relating to drug discovery: a knowledge graph perspective
S Bonner, IP Barrett, C Ye, R Swiers, O Engkvist, A Bender, CT Hoyt, ...
Briefings in Bioinformatics 23 (6), bbac404, 2022
The role of metadata in reproducible computational research
J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg
Patterns 2 (9), 2021
ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases
D Domingo-Fernández, CT Hoyt, C Bobis-Álvarez, J Marín-Llaó, ...
NPJ systems biology and applications 4 (1), 43, 2018
A simple standard for sharing ontological mappings (SSSOM)
N Matentzoglu, JP Balhoff, SM Bello, C Bizon, M Brush, TJ Callahan, ...
Database 2022, baac035, 2022
Understanding the performance of knowledge graph embeddings in drug discovery
S Bonner, IP Barrett, C Ye, R Swiers, O Engkvist, CT Hoyt, WL Hamilton
Artificial Intelligence in the Life Sciences 2, 100036, 2022
Mondo: Unifying diseases for the world, by the world
NA Vasilevsky, NA Matentzoglu, S Toro, JE Flack IV, H Hegde, DR Unni, ...
MedRxiv, 2022.04. 13.22273750, 2022
PyBEL: a computational framework for Biological Expression Language
CT Hoyt, A Konotopez, C Ebeling
Bioinformatics 34 (4), 703-704, 2018
PathMe: merging and exploring mechanistic pathway knowledge
D Domingo-Fernández, S Mubeen, J Marín-Llaó, CT Hoyt, ...
BMC bioinformatics 20, 1-12, 2019
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies
N Matentzoglu, D Goutte-Gattat, SZK Tan, JP Balhoff, S Carbon, ...
Database 2022, baac087, 2022
BioKEEN: a library for learning and evaluating biological knowledge graph embeddings
M Ali, CT Hoyt, D Domingo-Fernández, J Lehmann, H Jabeen
Bioinformatics 35 (18), 3538-3540, 2019
Repurposing human PDE4 inhibitors for neglected tropical diseases: Design, synthesis and evaluation of cilomilast analogues as Trypanosoma brucei PDEB1 …
E Amata, ND Bland, CT Hoyt, L Settimo, RK Campbell, MP Pollastri
Bioorganic & medicinal chemistry letters 24 (17), 4084-4089, 2014
Identifying the parametric occurrence of multiple steady states for some biological networks
R Bradford, JH Davenport, M England, H Errami, V Gerdt, D Grigoriev, ...
Journal of Symbolic Computation 98, 84-119, 2020
A case study on the parametric occurrence of multiple steady states
R Bradford, JH Davenport, M England, H Errami, V Gerdt, D Grigoriev, ...
Proceedings of the 2017 ACM on International Symposium on Symbolic and …, 2017
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, baz068, 2019
Democratizing knowledge representation with BioCypher
S Lobentanzer, P Aloy, J Baumbach, B Bohar, VJ Carey, P Charoentong, ...
Nature Biotechnology 41 (8), 1056-1059, 2023
Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes
LM Doherty, CE Mills, SA Boswell, X Liu, CT Hoyt, B Gyori, SJ Buhrlage, ...
Elife 11, e72879, 2022
Chemicalx: A deep learning library for drug pair scoring
B Rozemberczki, CT Hoyt, A Gogleva, P Grabowski, K Karis, A Lamov, ...
Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and …, 2022
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