Nuno Rodrigues Faria

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Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Ester Cerdeira SabinoUniversidade de Sao PauloVerified email at usp.br
Philippe LemeyFull Professor, KU LeuvenVerified email at kuleuven.be
Moritz U G KraemerAssociate Professor, University of OxfordVerified email at biology.ox.ac.uk
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Darlan CândidoResearch Associate, Imperial College LondonVerified email at ic.ac.uk
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Bernardo GutierrezUniversity of OxfordVerified email at zoo.ox.ac.uk
Chieh-Hsi WuLecturer in Statistics, University of SouthamptonVerified email at soton.ac.uk
Dr Lewis Fletcher BussMRC-DIDE, Imperial College LondonVerified email at imperial.ac.uk
Christopher DyeUniversity of OxfordVerified email at zoo.ox.ac.uk
Ingra M. ClaroMRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease aVerified email at ic.ac.uk
Vítor H. NascimentoUniversity of São PauloVerified email at usp.br
Simon DellicourUniversity of Bruxelles (ULB), University of Leuven (KU Leuven)Verified email at ulb.ac.be
Carlos Augusto Prete JuniorUniversidade de São PauloVerified email at usp.br
Anne-Mieke VandammeFull professor, KU Leuven, BelgiumVerified email at uzleuven.be
Nicholas J LomanProfessor of Microbial Genomics and Bioinformatics, University of BirminghamVerified email at bham.ac.uk
Louis du PlessisUniversity of OxfordVerified email at zoo.ox.ac.uk
Samuel V. Scarpino, PhDDirector of AI + Life Sciences, Northeastern UniversityVerified email at utexas.edu
John BrownsteinHarvard Medical SchoolVerified email at harvard.edu

Nuno Rodrigues Faria

Professor, Imperial College London & Visiting Professor, University of São Paulo

Verified email at ic.ac.uk - Homepage

Virus Evolution Genomic Epidemiology Molecular Evolution Virology Phylogenetics


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The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (64), 493-497, 2020	2900	2020
Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1411	2021
Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ... Science 352 (6283), 345-9, 2016	1174	2016
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, M Ward, ... Science 346 (6205), 56-61, 2014	955	2014
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017	954	2017
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence EC Sabino, LF Buss, MPS Carvalho, CA Prete Jr, MAE Crispim, NA Fraiji, ... The Lancet 397 (102), 452-455, 2021	889	2021
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus MUG Kraemer, RC Reiner Jr, OJ Brady, JP Messina, M Gilbert, DM Pigott, ... Nature Microbiology 4 (5), 901-901, 2019	766	2019
Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG de Jesus, WM de Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020	639	2020
Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, I Morales, J Theze, JG de Jesus, M Giovanetti, ... Nature 546, 406-410, 2017	602	2017
Emergence and potential for spread of Chikungunya virus in Brazil MRT Nunes, NR Faria, JM de Vasconcelos, N Golding, MUG Kraemer, ... BMC Medicine 13 (1), 1, 2015	573	2015
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic LF Buss, CA Prete, CMM Abrahim, A Mendrone, T Salomon, ... Science 371 (6526), 288-292, 2021	549	2021
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard Molecular Biology and Evolution 30 (3), 713-724, 2013	493	2013
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings NR Faria, IM Claro, D Candido, LAM Franco, PS Andrade, TM Coletti, ... Virological 372, 815-821, 2021	483*	2021
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017	424	2017
Epidemiological and clinical characteristics of the early phase of the COVID-19 epidemic in Brazil WM de Souza, LF Buss, D da Silva Candido, JP Carrera, S Li, A Zarebski, ... Nature Human Behaviour, 856-865, 2020	420	2020
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2 P Lemey, A Rambaut, T Bedford, NR Faria, F Bielejec, G Baele, ... PloS Pathogens 10 (2), e1003932, 2014	382	2014
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infect Genet Evol 19, 337-348, 2013	376	2013
Genomic epidemiology reveals multiple introductions of Zika virus into the United States ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ... Nature, 104794, 2017	354	2017
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science, eabf2946, 2021	345	2021
The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time L Josefsson, S Von Stockenstrom, NR Faria, E Sinclair, P Bacchetti, ... Proceedings of the National Academy of Sciences 110 (51), E4987-E4996, 2013	315	2013

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