Brendan Frey

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Benjamin J. BlencoweProfessor, University of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Frank R. KschischangProfessor of Electrical and Computer Engineering, University of TorontoVerified email at comm.utoronto.ca
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
Babak AlipanahiExai BioVerified email at exai.bio
Hui Yuan XiongRenaissance TechnologiesVerified email at psi.toronto.edu
Anitha KannanCuraiVerified email at curai.com
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
Geoffrey HintonEmeritus Prof. Computer Science, University of TorontoVerified email at cs.toronto.edu
Alex AceroAppleVerified email at apple.com
Janet RossantUniversity of TorontoVerified email at sickkids.ca
Li DengChief AI Officer, Citadel (former)Verified email at ieee.org
Manuel IrimiaCentre for Genomic RegulationVerified email at crg.eu
Nuno Barbosa-MoraisResearch Group Leader, Instituto de Medicina Molecular - LisbonVerified email at medicina.ulisboa.pt
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Thomas KislingerProfessor, University of TorontoVerified email at utoronto.ca
Scherer, Stephen W.The Hospital for Sick Children, Genetics and Genome Biology Program, University of TorontoVerified email at sickkids.ca
Vladimir JojicCalicoVerified email at calicolabs.com
Tomas BabakQueen's UniversityVerified email at queensu.ca
David MacKayProfessor of Natural Philosophy, Cavendish Laboratory, University of CambridgeVerified email at mrao.cam.ac.uk

Brendan Frey

Founder & CEO, Deep Genomics; Co-Founder, Vector Institute; Professor, University of Toronto

Verified email at psi.toronto.edu - Homepage

Drug development Artificial Intelligence Machine learning Computational biology Genome biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Factor graphs and the sum-product algorithm FR Kschischang, BJ Frey, HA Loeliger IEEE Transactions on information theory 47 (2), 498-519, 2001	8318	2001
Clustering by passing messages between data points BJ Frey, D Dueck science 315 (5814), 972-976, 2007	7829	2007
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing Q Pan, O Shai, LJ Lee, BJ Frey, BJ Blencowe Nature genetics 40 (12), 1413-1415, 2008	4223	2008
Adversarial autoencoders A Makhzani, J Shlens, N Jaitly, I Goodfellow, B Frey arXiv preprint arXiv:1511.05644, 2015	3006	2015
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning B Alipanahi, A Delong, MT Weirauch, BJ Frey Nature biotechnology 33 (8), 831-838, 2015	2737	2015
The" wake-sleep" algorithm for unsupervised neural networks GE Hinton, P Dayan, BJ Frey, RM Neal Science 268 (5214), 1158-1161, 1995	1495	1995
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013	1434	2013
The human splicing code reveals new insights into the genetic determinants of disease HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ... Science 347 (6218), 1254806, 2015	1334	2015
The evolutionary landscape of alternative splicing in vertebrate species NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong, S Gueroussov, LJ Lee, ... Science 338 (6114), 1587-1593, 2012	1076	2012
Deciphering the splicing code Y Barash, JA Calarco, W Gao, Q Pan, X Wang, O Shai, BJ Blencowe, ... Nature 465 (7294), 53-59, 2010	1056	2010
Graphical models for machine learning and digital communication BJ Frey MIT press, 1998	832	1998
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder RK C Yuen, D Merico, M Bookman, J L Howe, B Thiruvahindrapuram, ... Nature neuroscience 20 (4), 602-611, 2017	725	2017
Widespread intron retention in mammals functionally tunes transcriptomes U Braunschweig, NL Barbosa-Morais, Q Pan, EN Nachman, B Alipanahi, ... Genome research 24 (11), 1774-1786, 2014	638	2014
Iterative decoding of compound codes by probability propagation in graphical models FR Kschischang, BJ Frey IEEE Journal on Selected Areas in Communications 16 (2), 219-230, 1998	586	1998
Deep learning of the tissue-regulated splicing code MKK Leung, HY Xiong, LJ Lee, BJ Frey Bioinformatics 30 (12), i121-i129, 2014	578	2014
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast AB Parsons, A Lopez, IE Givoni, DE Williams, CA Gray, J Porter, G Chua, ... Cell 126 (3), 611-625, 2006	545	2006
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ... Cell 125 (1), 173-186, 2006	540	2006
A revolution: Belief propagation in graphs with cycles BJ Frey, D MacKay Advances in neural information processing systems 10, 1997	490	1997
Deep learning in biomedicine M Wainberg, D Merico, A Delong, BJ Frey Nature biotechnology 36 (9), 829-838, 2018	482	2018
Using expression profiling data to identify human microRNA targets JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ... Nature methods 4 (12), 1045-1049, 2007	465	2007

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