An integrated encyclopedia of DNA elements in the human genome ENCODE Nature 489, 57-74, 2012 | 17061 | 2012 |
Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1702 | 2012 |
Landscape and variation of RNA secondary structure across the human transcriptome Y Wan, K Qu, QC Zhang, RA Flynn, O Manor, Z Ouyang, J Zhang, ... Nature 505 (7485), 706-709, 2014 | 594 | 2014 |
Multiplexed detection of proteins, transcriptomes, clonotypes and CRISPR perturbations in single cells EP Mimitou, A Cheng, A Montalbano, S Hao, M Stoeckius, M Legut, ... Nature methods, 1, 2019 | 445 | 2019 |
ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells Z Ouyang, Q Zhou, WH Wong Proceedings of the National Academy of Sciences 106 (51), 21521-21526, 2009 | 407 | 2009 |
Genome-wide Measurement of RNA Folding Energies Y Wan, K Qu, Z Ouyang, M Kertesz, J Li, R Tibshirani, DL Makino, ... Molecular Cell, 2012 | 225 | 2012 |
Exon arrays provide accurate assessments of gene expression K Kapur, Y Xing, Z Ouyang, WH Wong Genome Biol 8 (5), R82, 2007 | 157 | 2007 |
Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis EY Lee, H Ji, Z Ouyang, B Zhou, W Ma, SA Vokes, AP McMahon, ... Proceedings of the National Academy of Sciences 107 (21), 9736-9741, 2010 | 139 | 2010 |
SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data Z Ouyang, MP Snyder, HY Chang Genome Research 23 (2), 377-387, 2013 | 132 | 2013 |
Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases C Li, A Menoret, C Farragher, Z Ouyang, C Bonin, P Holvoet, AT Vella, ... JCI insight, 2019 | 120 | 2019 |
Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing Y Wan, K Qu, Z Ouyang, HY Chang Nature Protocols 8 (5), 849-869, 2013 | 106 | 2013 |
Genome-wide DNA methylation profiling reveals cancer-associated changes within early colonic neoplasia RDW Hanley MP, Hahn MA, Li AX, Wu X, Lin J, Wang J, Choi AH, Ouyang Z, Fong ... Oncogene, 2017 | 86 | 2017 |
HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure C Zou, Y Zhang, Z Ouyang Genome biology 17 (1), 1, 2016 | 79 | 2016 |
Accuracy improvement for identifying translation initiation sites in microbial genomes HQ Zhu, GQ Hu, ZQ Ouyang, J Wang, ZS She Bioinformatics 20 (18), 3308-3317, 2004 | 70 | 2004 |
Assessing the conservation of mammalian gene expression using high-density exon arrays Y Xing, Z Ouyang, K Kapur, MP Scott, WH Wong Molecular biology and evolution 24 (6), 1283-1285, 2007 | 67 | 2007 |
DNA methylomes of bovine gametes and in vivo produced preimplantation embryos Z Jiang, J Lin, H Dong, X Zheng, SL Marjani, J Duan, Z Ouyang, J Chen, ... Biology of reproduction, 2018 | 63 | 2018 |
Correlation of Global MicroRNA Expression With Basal Cell Carcinoma Subtype C Heffelfinger, Z Ouyang, A Engberg, DJ Leffell, AM Hanlon, PB Gordon, ... G3: Genes| Genomes| Genetics 2 (2), 279-286, 2012 | 62 | 2012 |
Multimodal single-cell analysis of cutaneous T cell lymphoma reveals distinct sub-clonal tissue-dependent signatures A Herrera, A Cheng, EP Mimitou, A Seffens, D George, M Bar-Natan, ... Blood, 2021 | 50 | 2021 |
Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution Q You, AY Cheng, X Gu, BT Harada, M Yu, T Wu, B Ren, Z Ouyang, C He Nature Biotechnology, 1-11, 2020 | 44 | 2020 |
c-MYC regulates mRNA translation efficiency and start-site selection in lymphoma K Singh, J Lin, Y Zhong, A Burčul, P Mohan, M Jiang, L Sun, ... Journal of Experimental Medicine, jem. 20181726, 2019 | 41 | 2019 |