Lukáš Pravda
Lukáš Pravda
Exscientia
E-mailová adresa ověřena na: exscientia.co.uk
Název
Citace
Citace
Rok
PDBsum: Structural summaries of PDB entries
RA Laskowski, J Jabłońska, L Pravda, RS Vařeková, JM Thornton
Protein science 27 (1), 129-134, 2018
3912018
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
D Sehnal, RS Vařeková, K Berka, L Pravda, V Navrátilová, P Banáš, ...
Journal of cheminformatics 5 (1), 1-13, 2013
2142013
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research 47 (D1), D520-D528, 2019
2132019
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data
D Sehnal, M Deshpande, RS Vařeková, S Mir, K Berka, A Midlik, L Pravda, ...
Nature methods 14 (12), 1121-1122, 2017
1042017
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)
L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ...
Nucleic acids research 46 (W1), W368-W373, 2018
972018
Anatomy of enzyme channels
L Pravda, K Berka, RS Vařeková, D Sehnal, P Banáš, RA Laskowski, ...
BMC bioinformatics 15 (1), 1-8, 2014
762014
PDBe: improved findability of macromolecular structure data in the PDB
DR Armstrong, JM Berrisford, MJ Conroy, A Gutmanas, S Anyango, ...
Nucleic acids research 48 (D1), D335-D343, 2020
482020
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules
CM Ionescu, D Sehnal, FL Falginella, P Pant, L Pravda, T Bouchal, ...
Journal of cheminformatics 7 (1), 1-13, 2015
442015
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research 48 (D1), D344-D353, 2020
282020
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank
D Sehnal, R Svobodová Vařeková, L Pravda, CM Ionescu, S Geidl, ...
Nucleic acids research 43 (D1), D369-D375, 2015
252015
ChannelsDB: database of biomacromolecular tunnels and pores
L Pravda, D Sehnal, R Svobodová Vařeková, V Navrátilová, D Toušek, ...
Nucleic acids research 46 (D1), D399-D405, 2018
202018
PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank
D Sehnal, L Pravda, R Svobodová Vařeková, CM Ionescu, J Koča
Nucleic acids research 43 (W1), W383-W388, 2015
202015
The diversity of yellow-related proteins in sand flies (Diptera: Psychodidae)
M Sima, M Novotny, L Pravda, P Sumova, I Rohousova, P Volf
PLoS One 11 (11), e0166191, 2016
152016
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes
RS Vařeková, D Jaiswal, D Sehnal, CM Ionescu, S Geidl, L Pravda, ...
Nucleic acids research 42 (W1), W227-W233, 2014
152014
Finding enzyme cofactors in Protein Data Bank
A Mukhopadhyay, N Borkakoti, L Pravda, JD Tyzack, JM Thornton, ...
Bioinformatics 35 (18), 3510-3511, 2019
52019
The eighth central European conference “chemistry towards biology”: snapshot
A Perczel, AG Atanasov, V Sklenář, J Nováček, V Papoušková, ...
Molecules 21 (10), 1381, 2016
42016
PDBeCIF: an open-source mmCIF/CIF parsing and processing package
G van Ginkel, L Pravda, JM Dana, M Varadi, P Keller, S Anyango, ...
BMC bioinformatics 22 (1), 1-7, 2021
2021
The Enzyme Portal: an integrative tool for enzyme information and analysis
R Zaru, J Onwubiko, AJM Ribeiro, K Cochrane, JD Tyzack, ...
The FEBS Journal, 2021
2021
PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data
S Nair, M Váradi, N Nadzirin, L Pravda, S Anyango, S Mir, J Berrisford, ...
Bioinformatics, 2021
2021
Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases
J Koča, RS Vařeková, L Pravda, K Berka, S Geidl, D Sehnal, M Otyepka
Springer, 2017
2017
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Články 1–20