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Eric Alan Franzosa
Eric Alan Franzosa
Senior Research Scientist / Harvard T. H. Chan School of Public Health
Verified email at hsph.harvard.edu - Homepage
Title
Cited by
Cited by
Year
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ...
Nature methods 12 (10), 902-903, 2015
15622015
A proteome-scale map of the human interactome network
T Rolland, M Taşan, B Charloteaux, SJ Pevzner, Q Zhong, N Sahni, S Yi, ...
Cell 159 (5), 1212-1226, 2014
12492014
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ...
Nature 569 (7758), 655-662, 2019
11172019
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans
T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ...
Cell 165 (4), 842-853, 2016
9722016
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes
AD Kostic, D Gevers, H Siljander, T Vatanen, T Hyötyläinen, ...
Cell host & microbe 17 (2), 260-273, 2015
9342015
Species-level functional profiling of metagenomes and metatranscriptomes
EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ...
Nature methods 15 (11), 962-968, 2018
9142018
Strains, functions and dynamics in the expanded Human Microbiome Project
J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ...
Nature 550 (7674), 61-66, 2017
8532017
Gut microbiome structure and metabolic activity in inflammatory bowel disease
EA Franzosa, A Sirota-Madi, J Avila-Pacheco, N Fornelos, HJ Haiser, ...
Nature microbiology 4 (2), 293-305, 2019
7542019
Linking the human gut microbiome to inflammatory cytokine production capacity
M Schirmer, SP Smeekens, H Vlamakis, M Jaeger, M Oosting, ...
Cell 167 (4), 1125-1136. e8, 2016
7422016
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
M Yassour, T Vatanen, H Siljander, AM Hämäläinen, T Härkönen, ...
Science translational medicine 8 (343), 343ra81-343ra81, 2016
6982016
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
EA Franzosa, T Hsu, A Sirota-Madi, A Shafquat, G Abu-Ali, XC Morgan, ...
Nature Reviews Microbiology, 2015
5742015
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
5372014
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
T Vatanen, EA Franzosa, R Schwager, S Tripathi, TD Arthur, K Vehik, ...
Nature 562 (7728), 589-594, 2018
4732018
Identifying personal microbiomes using metagenomic codes
EA Franzosa, K Huang, JF Meadow, D Gevers, KP Lemon, ...
Proceedings of the National Academy of Sciences 112 (22), E2930-E2938, 2015
4132015
Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation
M Wlodarska, C Luo, R Kolde, E d’Hennezel, JW Annand, CE Heim, ...
Cell host & microbe 22 (1), 25-37. e6, 2017
3942017
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
M Schirmer, EA Franzosa, J Lloyd-Price, LJ McIver, R Schwager, ...
Nature microbiology 3 (3), 337-346, 2018
3202018
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
Elife 10, e65088, 2021
2862021
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ...
Cell host & microbe 17 (3), 385-391, 2015
2502015
Multivariable association discovery in population-scale meta-omics studies
H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ...
PLoS computational biology 17 (11), e1009442, 2021
2352021
High-specificity targeted functional profiling in microbial communities with ShortBRED
J Kaminski, MK Gibson, EA Franzosa, N Segata, G Dantas, ...
PLoS computational biology 11 (12), e1004557, 2015
2152015
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