Carl Kingsford

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Geet DuggalPh.D. Student, School of Computer Science, Carnegie Mellon UniversityE-mailová adresa ověřena na: cs.cmu.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityE-mailová adresa ověřena na: jhu.edu
Saket NavlakhaAssociate Professor, Cold Spring Harbor LaboratoryE-mailová adresa ověřena na: cshl.edu
Darya FilippovaHippocraticAIE-mailová adresa ověřena na: hippocraticai.com
Niranjan NagarajanSenior Group Leader, Genome Institute of SingaporeE-mailová adresa ověřena na: gis.a-star.edu.sg
Mihai PopProfessor of Computer Science, University of Maryland, College ParkE-mailová adresa ověřena na: umd.edu
Stephen M. MountAssociate Professor, Dept. of Cell Biology and Molecular Genetics, University of MarylandE-mailová adresa ověřena na: umd.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityE-mailová adresa ověřena na: cs.jhu.edu
Sridhar HannenhalliSenior Investigator, Cancer Data Science Lab, National Cancer Institute. NIHE-mailová adresa ověřena na: nih.gov
samir khullerBarris Professor and Chair of Computer Science, Northwestern UniversityE-mailová adresa ověřena na: northwestern.edu
Elena ZaslavskyAssociate Professor, Neurology, Mount Sinai School of MedicineE-mailová adresa ověřena na: mssm.edu
Fernando BenadonAmerican UniversityE-mailová adresa ověřena na: american.edu
David R KelleyCalico LabsE-mailová adresa ověřena na: calicolabs.com

Sledovat

Carl Kingsford

Professor, Computational Biology Department, School of Computer Science, Carnegie

E-mailová adresa ověřena na: cs.cmu.edu - Domovská stránka

Computational Biology Algorithms


Název Seřadit podle citací Seřadit podle roku Seřadit podle názvu	Citace Citace	Rok
Salmon provides fast and bias-aware quantification of transcript expression R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford Nature methods 14 (4), 417-419, 2017	8840	2017
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011	3677	2011
What are decision trees? C Kingsford, SL Salzberg Nature biotechnology 26 (9), 1011-1013, 2008	832	2008
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms R Patro, SM Mount, C Kingsford Nature biotechnology 32 (5), 462-464, 2014	779	2014
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake CL Kingsford, K Ayanbule, SL Salzberg Genome biology 8, 1-12, 2007	597	2007
The power of protein interaction networks for associating genes with diseases S Navlakha, C Kingsford Bioinformatics 26 (8), 1057-1063, 2010	426	2010
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019	415	2019
Genome analysis linking recent European and African influenza (H5N1) viruses SL Salzberg, C Kingsford, G Cattoli, DJ Spiro, DA Janies, MM Aly, ... Emerging infectious diseases 13 (5), 713, 2007	265	2007
Global network alignment using multiscale spectral signatures R Patro, C Kingsford Bioinformatics 28 (23), 3105-3114, 2012	254	2012
Solving and analyzing side-chain positioning problems using linear and integer programming CL Kingsford, B Chazelle, M Singh Bioinformatics 21 (7), 1028-1039, 2005	250	2005
Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9, 1-11, 2014	249	2014
Accurate assembly of transcripts through phase-preserving graph decomposition M Shao, C Kingsford Nature biotechnology 35 (12), 1167-1169, 2017	198	2017
Assembly complexity of prokaryotic genomes using short reads C Kingsford, MC Schatz, M Pop BMC bioinformatics 11, 1-11, 2010	194	2010
Salmon: accurate, versatile and ultrafast quantification from RNA-seq data using lightweight-alignment R Patro, G Duggal, C Kingsford BioRxiv 10, 021592, 2015	176	2015
Fast search of thousands of short-read sequencing experiments B Solomon, C Kingsford Nature biotechnology 34 (3), 300-302, 2016	166	2016
Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21, 1-29, 2020	156	2020
Alignment and clustering of phylogenetic markers-implications for microbial diversity studies JR White, S Navlakha, N Nagarajan, MR Ghodsi, C Kingsford, M Pop BMC bioinformatics 11, 1-10, 2010	115	2010
A semidefinite programming approach to side chain positioning with new rounding strategies B Chazelle, C Kingsford, M Singh INFORMS Journal on Computing 16 (4), 380-392, 2004	111	2004
Network archaeology: uncovering ancient networks from present-day interactions S Navlakha, C Kingsford PLoS computational biology 7 (4), e1001119, 2011	94	2011
Experimental construction of very large scale DNA databases with associative search capability JH Reif, TH LaBean, M Pirrung, VS Rana, B Guo, C Kingsford, ... DNA Computing: 7th International Workshop on DNA-Based Computers, DNA7 Tampa …, 2002	91	2002

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