Sledovat
Ondřej Strnad
Ondřej Strnad
Research Scientist at KAUST
E-mailová adresa ověřena na: kaust.edu.sa
Název
Citace
Citace
Rok
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...
Public Library of Science 8 (10), e1002708, 2012
9602012
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
2132018
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ...
Bioinformatics 30 (18), 2684-2685, 2014
1542014
Modeling in the time of COVID-19: Statistical and rule-based mesoscale models
N Nguyen, O Strnad, T Klein, D Luo, R Alharbi, P Wonka, M Maritan, ...
IEEE transactions on visualization and computer graphics 27 (2), 722, 2021
272021
Molecumentary: Adaptable narrated documentaries using molecular visualization
D Kouril, O Strnad, P Mindek, S Halladjian, T Isenberg, E Groeller, I Viola
IEEE Transactions on Visualization and Computer Graphics, 2021
92021
CAVER 2.1
P Beneš, B Kozlíková, O Strnad, V Šustr, E Chovancová, A Pavelka, ...
92010
New path planning method for computation of constrained dynamic channels in proteins
P Beneš, O Strnad, J Sochor
Václav Skala-UNION Agency, 2011
62011
Computation of dynamic channels in proteins
P Beneš, P Medek, O Strnad, J Sochor
Proceedings of Biotechno, U. o. S. Pei-Yuan Qian, KAUST and HK Technology …, 2011
52011
Algorithms for Detecting Pathways in Large Protein Structures and Their Ensembles
O Strnad
PhD thesis. Masaryk Univer sity, 2014
32014
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations.
B Kozlíková, A Jurcík, J Byska, O Strnad, J Sochor
VCBM, 97-106, 2014
22014
Detection of intramolecular tunnels connecting sequence of sites in protein structures
O Strnad, B Kozlikova, J Sochor
8th International Conference on Practical Applications of Computational …, 2014
22014
Real-time visualization of protein empty space with varying parameters
O Strnad, V Šustr, B Kozlıková, J Sochor
Proceedings of BIOTECHNO, IARIA XPS Press, 65-70, 2013
22013
CAVER 3.0
E Chovancová, A Pavelka, P Beneš, O Strnad, J Brezovský, B Kozlíková, ...
22011
Nanotilus: Generator of immersive guided-tours in crowded 3d environments
R Alharbi, O Strnad, LR Luidolt, M Waldner, D Kouril, C Bohak, T Klein, ...
IEEE Transactions on Visualization and Computer Graphics, 2021
12021
Finding Nano-\" Otzi: Semi-Supervised Volume Visualization for Cryo-Electron Tomography
N Nguyen, C Bohak, D Engel, P Mindek, O Strnad, P Wonka, S Li, ...
arXiv preprint arXiv:2104.01554, 2021
12021
Geometrical detection of pathways in protein structures leading among more binding sites
O Strnad, V Šustr, B Kozlıková, J Sochor
BIOTECHNO, 93-98, 2014
12014
Real-time visualization and exploration of protein empty space with varying parameters
O Strnad, B Kozlıková, V Šustr, J Sochor
International Journal on Advances in Life Sciences 5 (3), 2013
12013
GPU Accelerated 3D Tomographic Reconstruction and Visualization from Noisy Electron Microscopy Tilt-Series
JR Ramirez, P Rautek, C Bohak, O Strnad, Z Zhang, S Li, I Viola, ...
IEEE Transactions on Visualization and Computer Graphics, 2022
2022
Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation
N Nguyen, C Bohak, D Engel, P Mindek, O Strnad, P Wonka, S Li, ...
IEEE Transactions on Visualization and Computer Graphics, 2022
2022
Volume Conductor: Interactive Visibility Management for Crowded Volumes
Ž Lesar, R Alharbi, C Bohak, O Strnad, C Heinzl, M Marolt, I Viola
arXiv preprint arXiv:2206.07392, 2022
2022
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Články 1–20