| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012 | 960 | 2012 |
| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 213 | 2018 |
| CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ... Bioinformatics 30 (18), 2684-2685, 2014 | 154 | 2014 |
| Modeling in the time of COVID-19: Statistical and rule-based mesoscale models N Nguyen, O Strnad, T Klein, D Luo, R Alharbi, P Wonka, M Maritan, ... IEEE transactions on visualization and computer graphics 27 (2), 722, 2021 | 27 | 2021 |
| Molecumentary: Adaptable narrated documentaries using molecular visualization D Kouril, O Strnad, P Mindek, S Halladjian, T Isenberg, E Groeller, I Viola IEEE Transactions on Visualization and Computer Graphics, 2021 | 9 | 2021 |
| CAVER 2.1 P Beneš, B Kozlíková, O Strnad, V Šustr, E Chovancová, A Pavelka, ... | 9 | 2010 |
| New path planning method for computation of constrained dynamic channels in proteins P Beneš, O Strnad, J Sochor Václav Skala-UNION Agency, 2011 | 6 | 2011 |
| Computation of dynamic channels in proteins P Beneš, P Medek, O Strnad, J Sochor Proceedings of Biotechno, U. o. S. Pei-Yuan Qian, KAUST and HK Technology …, 2011 | 5 | 2011 |
| Algorithms for Detecting Pathways in Large Protein Structures and Their Ensembles O Strnad PhD thesis. Masaryk Univer sity, 2014 | 3 | 2014 |
| Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. B Kozlíková, A Jurcík, J Byska, O Strnad, J Sochor VCBM, 97-106, 2014 | 2 | 2014 |
| Detection of intramolecular tunnels connecting sequence of sites in protein structures O Strnad, B Kozlikova, J Sochor 8th International Conference on Practical Applications of Computational …, 2014 | 2 | 2014 |
| Real-time visualization of protein empty space with varying parameters O Strnad, V Šustr, B Kozlıková, J Sochor Proceedings of BIOTECHNO, IARIA XPS Press, 65-70, 2013 | 2 | 2013 |
| CAVER 3.0 E Chovancová, A Pavelka, P Beneš, O Strnad, J Brezovský, B Kozlíková, ... | 2 | 2011 |
| Nanotilus: Generator of immersive guided-tours in crowded 3d environments R Alharbi, O Strnad, LR Luidolt, M Waldner, D Kouril, C Bohak, T Klein, ... IEEE Transactions on Visualization and Computer Graphics, 2021 | 1 | 2021 |
| Finding Nano-\" Otzi: Semi-Supervised Volume Visualization for Cryo-Electron Tomography N Nguyen, C Bohak, D Engel, P Mindek, O Strnad, P Wonka, S Li, ... arXiv preprint arXiv:2104.01554, 2021 | 1 | 2021 |
| Geometrical detection of pathways in protein structures leading among more binding sites O Strnad, V Šustr, B Kozlıková, J Sochor BIOTECHNO, 93-98, 2014 | 1 | 2014 |
| Real-time visualization and exploration of protein empty space with varying parameters O Strnad, B Kozlıková, V Šustr, J Sochor International Journal on Advances in Life Sciences 5 (3), 2013 | 1 | 2013 |
| GPU Accelerated 3D Tomographic Reconstruction and Visualization from Noisy Electron Microscopy Tilt-Series JR Ramirez, P Rautek, C Bohak, O Strnad, Z Zhang, S Li, I Viola, ... IEEE Transactions on Visualization and Computer Graphics, 2022 | | 2022 |
| Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation N Nguyen, C Bohak, D Engel, P Mindek, O Strnad, P Wonka, S Li, ... IEEE Transactions on Visualization and Computer Graphics, 2022 | | 2022 |
| Volume Conductor: Interactive Visibility Management for Crowded Volumes Ž Lesar, R Alharbi, C Bohak, O Strnad, C Heinzl, M Marolt, I Viola arXiv preprint arXiv:2206.07392, 2022 | | 2022 |
