Rachel Whitaker

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Nicholas YoungblutGroup Leader, Max Planck Institute for Developmental BiologyVerified email at tuebingen.mpg.de
Joshua S WeitzProfessor, Biology, U of Maryland; Blaise Pascal Chair, IBENSVerified email at gatech.edu
John W. TaylorProfessor, University of California, BerkeleyVerified email at berkeley.edu
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Mark YoungMontana State UniversityVerified email at montana.edu
Hinsby Cadillo-QuirozAssociate Professor, School of Life Sciences, Arizona State UniversityVerified email at asu.edu
Xavier DidelotUniversity of WarwickVerified email at warwick.ac.uk
Katherine (Trina) McMahonProfessor of Bacteriology, and Civil and Environmental Engineering, University of Wisconsin MadisonVerified email at engr.wisc.edu
Jordan S ReadConsortium of Universities for the Advancement of Hydrologic Science, Inc.Verified email at cuahsi.org
Ashley ShadeCentre National de la Recherche Scientifique (CNRS), FranceVerified email at cnrs.fr
Lauren M. ChildsAssociate Professor, Virginia TechVerified email at vt.edu
William W. MetcalfDepartment of Microbiology, University of IllinoisVerified email at illinois.edu
Jessica L. GreenPhylagen, Inc.Verified email at phylagen.com
Brendan BohannanProfessor of Environmental Studies and Biology, University of OregonVerified email at uoregon.edu
Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyVerified email at qut.edu.au
Eric E. AllenProfessor of Marine Microbiology, University of California San DiegoVerified email at ucsd.edu
Christopher FieldsBioinformatics Roustabout, UIUCVerified email at illinois.edu

Rachel Whitaker

Professor of Microbiology, University of Illinois

Verified email at life.illinois.edu

Microbial evolution host-pathogen interactions genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Geographic barriers isolate endemic populations of hyperthermophilic archaea RJ Whitaker, DW Grogan, JW Taylor Science 301 (5635), 976-978, 2003	931	2003
Microbial biogeography: from taxonomy to traits JL Green, BJM Bohannan, RJ Whitaker science 320 (5879), 1039-1043, 2008	638	2008
Biogeography of the Sulfolobus islandicus pan-genome ML Reno, NL Held, CJ Fields, PV Burke, RJ Whitaker Proceedings of the National Academy of Sciences 106 (21), 8605-8610, 2009	265	2009
Patterns of gene flow define species of thermophilic Archaea H Cadillo-Quiroz, X Didelot, NL Held, A Herrera, A Darling, ML Reno, ... PLoS biology 10 (2), e1001265, 2012	231	2012
Lake microbial communities are resilient after a whole-ecosystem disturbance A Shade, JS Read, ND Youngblut, N Fierer, R Knight, TK Kratz, NR Lottig, ... The ISME journal 6 (12), 2153-2167, 2012	228	2012
Drinking water microbiome assembly induced by water stagnation F Ling, R Whitaker, MW LeChevallier, WT Liu The ISME journal 12 (6), 1520-1531, 2018	200	2018
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes NL Held, RJ Whitaker Environmental Microbiology 11 (2), 457-466, 2009	180	2009
Genome dynamics in a natural archaeal population EE Allen, GW Tyson, RJ Whitaker, JC Detter, PM Richardson, JF Banfield Proceedings of the National Academy of Sciences 104 (6), 1883-1888, 2007	148	2007
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity JS Athukoralage, SA McMahon, C Zhang, S Grüschow, S Graham, ... Nature 577 (7791), 572-575, 2020	140	2020
ITEP: an integrated toolkit for exploration of microbial pan-genomes MN Benedict, JR Henriksen, WW Metcalf, RJ Whitaker, ND Price BMC genomics 15, 1-11, 2014	130	2014
Population genomics in natural microbial communities RJ Whitaker, JF Banfield Trends in Ecology & Evolution 21 (9), 508-516, 2006	111	2006
Recombination Shapes the Natural Population Structure of the Hyperthermophilic Archaeon Sulfolobus islandicus RJ Whitaker, DW Grogan, JW Taylor Molecular biology and evolution 22 (12), 2354-2361, 2005	110	2005
CRISPR associated diversity within a population of Sulfolobus islandicus NL Held, A Herrera, H Cadillo-Quiroz, RJ Whitaker PLoS One 5 (9), e12988, 2010	109	2010
Mechanisms of gene flow in archaea A Wagner, RJ Whitaker, DJ Krause, JH Heilers, M Van Wolferen, ... Nature Reviews Microbiology 15 (8), 492-501, 2017	107	2017
Allopatric origins of microbial species RJ Whitaker Philosophical Transactions of the Royal Society B: Biological Sciences 361 …, 2006	107	2006
A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments JH Munson-McGee, S Peng, S Dewerff, R Stepanauskas, RJ Whitaker, ... The ISME journal 12 (7), 1706-1714, 2018	94	2018
Multiscale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin LM Childs, NL Held, MJ Young, RJ Whitaker, JS Weitz Evolution 66 (7), 2015-2029, 2012	93	2012
The essential genome of the crenarchaeal model Sulfolobus islandicus C Zhang, APR Phillips, RL Wipfler, GJ Olsen, RJ Whitaker Nature communications 9 (1), 4908, 2018	89	2018
The Population Structure of Pseudomonas aeruginosa Is Characterized by Genetic Isolation of exoU+ and exoS+ Lineages EA Ozer, E Nnah, X Didelot, RJ Whitaker, AR Hauser Genome biology and evolution 11 (7), 1780-1796, 2019	82	2019
CRISPR-induced distributed immunity in microbial populations LM Childs, WE England, MJ Young, JS Weitz, RJ Whitaker PloS one 9 (7), e101710, 2014	74	2014

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