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Jeffrey R Whiteaker
Jeffrey R Whiteaker
Verified email at fredhutch.org
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Cited by
Year
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ...
Nature biotechnology 27 (7), 633-641, 2009
11392009
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
8922016
Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry
DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ...
Journal of proteome research 9 (2), 761-776, 2010
6292010
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
5662019
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
4872019
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
4582020
A targeted proteomics–based pipeline for verification of biomarkers in plasma
JR Whiteaker, C Lin, J Kennedy, L Hou, M Trute, I Sokal, P Yan, ...
Nature biotechnology 29 (7), 625-634, 2011
4022011
Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function
AI Salter, RG Ivey, JJ Kennedy, V Voillet, A Rajan, EJ Alderman, ...
Science signaling 11 (544), eaat6753, 2018
3962018
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
3892021
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein …
JR Whiteaker, L Zhao, L Anderson, AG Paulovich
Molecular & Cellular Proteomics 9 (1), 184-196, 2010
3592010
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS
M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, ...
Bioinformatics 22 (15), 1902-1909, 2006
3252006
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3222020
Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers
JR Whiteaker, L Zhao, HY Zhang, LC Feng, BD Piening, L Anderson, ...
Analytical biochemistry 362 (1), 44-54, 2007
3212007
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
3112020
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
B MacLean, DM Tomazela, SE Abbatiello, S Zhang, JR Whiteaker, ...
Analytical chemistry 82 (24), 10116-10124, 2010
2642010
The interface between biomarker discovery and clinical validation: the tar pit of the protein biomarker pipeline
AG Paulovich, JR Whiteaker, AN Hoofnagle, P Wang
PROTEOMICS–Clinical Applications 2 (10‐11), 1386-1402, 2008
2622008
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer cell 39 (3), 361-379. e16, 2021
2172021
Panorama: a targeted proteomics knowledge base
V Sharma, J Eckels, GK Taylor, NJ Shulman, AB Stergachis, SA Joyner, ...
Journal of proteome research 13 (9), 4205-4210, 2014
2172014
Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer
JR Whiteaker, H Zhang, L Zhao, P Wang, KS Kelly-Spratt, RG Ivey, ...
Journal of proteome research 6 (10), 3962-3975, 2007
2162007
Recommendations for the generation, quantification, storage, and handling of peptides used for mass spectrometry–based assays
AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ...
Clinical chemistry 62 (1), 48-69, 2016
2142016
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