Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ... Nature biotechnology 27 (7), 633-641, 2009 | 1139 | 2009 |
Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 892 | 2016 |
Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ... Journal of proteome research 9 (2), 761-776, 2010 | 629 | 2010 |
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ... Cell 177 (4), 1035-1049. e19, 2019 | 566 | 2019 |
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 487 | 2019 |
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 458 | 2020 |
A targeted proteomics–based pipeline for verification of biomarkers in plasma JR Whiteaker, C Lin, J Kennedy, L Hou, M Trute, I Sokal, P Yan, ... Nature biotechnology 29 (7), 625-634, 2011 | 402 | 2011 |
Phosphoproteomic analysis of chimeric antigen receptor signaling reveals kinetic and quantitative differences that affect cell function AI Salter, RG Ivey, JJ Kennedy, V Voillet, A Rajan, EJ Alderman, ... Science signaling 11 (544), eaat6753, 2018 | 396 | 2018 |
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 389 | 2021 |
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein … JR Whiteaker, L Zhao, L Anderson, AG Paulovich Molecular & Cellular Proteomics 9 (1), 184-196, 2010 | 359 | 2010 |
A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, ... Bioinformatics 22 (15), 1902-1909, 2006 | 325 | 2006 |
Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 322 | 2020 |
Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers JR Whiteaker, L Zhao, HY Zhang, LC Feng, BD Piening, L Anderson, ... Analytical biochemistry 362 (1), 44-54, 2007 | 321 | 2007 |
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 311 | 2020 |
Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry B MacLean, DM Tomazela, SE Abbatiello, S Zhang, JR Whiteaker, ... Analytical chemistry 82 (24), 10116-10124, 2010 | 264 | 2010 |
The interface between biomarker discovery and clinical validation: the tar pit of the protein biomarker pipeline AG Paulovich, JR Whiteaker, AN Hoofnagle, P Wang PROTEOMICS–Clinical Applications 2 (10‐11), 1386-1402, 2008 | 262 | 2008 |
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 217 | 2021 |
Panorama: a targeted proteomics knowledge base V Sharma, J Eckels, GK Taylor, NJ Shulman, AB Stergachis, SA Joyner, ... Journal of proteome research 13 (9), 4205-4210, 2014 | 217 | 2014 |
Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer JR Whiteaker, H Zhang, L Zhao, P Wang, KS Kelly-Spratt, RG Ivey, ... Journal of proteome research 6 (10), 3962-3975, 2007 | 216 | 2007 |
Recommendations for the generation, quantification, storage, and handling of peptides used for mass spectrometry–based assays AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ... Clinical chemistry 62 (1), 48-69, 2016 | 214 | 2016 |