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Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at hms.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
22082013
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
Advances in neural information processing systems 33, 22118-22133, 2020
18022020
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 2019
1777*2019
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
10532018
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
9922019
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
5682017
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
4342019
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge…, 2018
4062018
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
D Morselli Gysi, Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ...
Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021
3922021
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
3702018
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
2772018
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
2732019
Interpretability of machine learning‐based prediction models in healthcare
G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5…, 2020
2672020
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
2552017
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening
K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun
arXiv preprint arXiv:2004.08919, 2020
246*2020
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
235*2015
Gnnguard: Defending graph neural networks against adversarial attacks
X Zhang, M Zitnik
Advances in neural information processing systems 33, 9263-9275, 2020
1892020
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
1552015
To embed or not: network embedding as a paradigm in computational biology
W Nelson, M Zitnik, B Wang, J Leskovec, A Goldenberg, R Sharan
Frontiers in genetics 10, 381, 2019
1432019
Graph meta learning via local subgraphs
K Huang, M Zitnik
Advances in neural information processing systems 33, 5862-5874, 2020
1372020
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