| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 10091 | 2019 |
| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 975 | 2019 |
| Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome P Ferretti, E Pasolli, A Tett, F Asnicar, V Gorfer, S Fedi, F Armanini, ... Cell host & microbe 24 (1), 133-145. e5, 2018 | 794 | 2018 |
| Compact graphical representation of phylogenetic data and metadata with GraPhlAn F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata PeerJ 3, e1029, 2015 | 612* | 2015 |
| Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ... elife 10, e65088, 2021 | 548 | 2021 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 523 | 2019 |
| Human postprandial responses to food and potential for precision nutrition SE Berry, AM Valdes, DA Drew, F Asnicar, M Mazidi, J Wolf, J Capdevila, ... Nature medicine 26 (6), 964-973, 2020 | 387 | 2020 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature Medicine 27 (2), 321-332, 2021 | 384 | 2021 |
| Strain-level microbial epidemiology and population genomics from shotgun metagenomics M Scholz, DV Ward, E Pasolli, T Tolio, M Zolfo, F Asnicar, DT Truong, ... Nature methods 13 (5), 435-438, 2016 | 359 | 2016 |
| Strain-level analysis of mother-to-child bacterial transmission during the first few months of life M Yassour, E Jason, LJ Hogstrom, TD Arthur, S Tripathi, H Siljander, ... Cell host & microbe 24 (1), 146-154. e4, 2018 | 290 | 2018 |
| Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling F Asnicar, S Manara, M Zolfo, DT Truong, M Scholz, F Armanini, P Ferretti, ... MSystems 2 (1), e00164-16, 2017 | 280 | 2017 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020 | 259 | 2020 |
| The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell host & microbe 26 (5), 666-679. e7, 2019 | 246 | 2019 |
| Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth E Zagato, C Pozzi, A Bertocchi, T Schioppa, F Saccheri, S Guglietta, ... Nature microbiology 5 (3), 511-524, 2020 | 202 | 2020 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 177 | 2019 |
| Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis A Tett, E Pasolli, S Farina, DT Truong, F Asnicar, M Zolfo, F Beghini, ... npj Biofilms and Microbiomes 3 (1), 14, 2017 | 156 | 2017 |
| Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver A Bertocchi, S Carloni, PS Ravenda, G Bertalot, I Spadoni, AL Cascio, ... Cancer Cell 39 (5), 708-724. e11, 2021 | 121 | 2021 |
| Ketogenic diet and ketone bodies enhance the anticancer effects of PD-1 blockade G Ferrere, MT Alou, P Liu, AG Goubet, M Fidelle, O Kepp, S Durand, ... JCI insight 6 (2), 2021 | 106 | 2021 |
| Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ... Nature Medicine 28 (3), 535-544, 2022 | 102 | 2022 |
| Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma G Ianiro, E Rossi, AM Thomas, G Schinzari, L Masucci, G Quaranta, ... Nature communications 11 (1), 4333, 2020 | 74 | 2020 |
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
