| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis D Vallenet, A Calteau, M Dubois, P Amours, A Bazin, M Beuvin, L Burlot, ... Nucleic acids research 48 (D1), D579-D589, 2020 | 238 | 2020 |
| PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graph G Gautreau, A Bazin, M Gachet, R Planel, L Burlot, M Dubois, A Perrin, ... PLoS computational biology 16 (3), e1007732, 2020 | 130 | 2020 |
| Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe‐S carrier B Py, C Gerez, S Angelini, R Planel, D Vinella, L Loiseau, E Talla, ... Molecular microbiology 86 (1), 155-171, 2012 | 104 | 2012 |
| MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data C Médigue, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... Briefings in bioinformatics 20 (4), 1071-1084, 2019 | 61 | 2019 |
| On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria A Calvo-Villamañán, JW Ng, R Planel, H Ménager, A Chen, L Cui, ... Nucleic acids research 48 (11), e64-e64, 2020 | 47 | 2020 |
| Ribosomal proteins: toward a next generation standard for prokaryotic systematics? HG Ramulu, M Groussin, E Talla, R Planel, V Daubin, C Brochier-Armanet Molecular phylogenetics and evolution 75, 103-117, 2014 | 36 | 2014 |
| Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium F Lassalle, R Planel, S Penel, D Chapulliot, V Barbe, A Dubost, A Calteau, ... Genome biology and evolution 9 (12), 3413-3431, 2017 | 29 | 2017 |
| RecPhyloXML: a format for reconciled gene trees W Duchemin, G Gence, AM Arigon Chifolleau, L Arvestad, MS Bansal, ... Bioinformatics 34 (21), 3646-3652, 2018 | 21 | 2018 |
| No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes CM Francois, L Duret, L Simon, F Mermillod-Blondin, F Malard, ... Molecular Biology and Evolution 33 (10), 2605-2620, 2016 | 9 | 2016 |
| A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases. F Tesson, R Planel, AA Egorov, H Georjon, H Vaysset, B Brancotte, ... bioRxiv, 2024.01. 25.577194, 2024 | 1 | 2024 |
| MICROSCOPE: an integrated platform for the Exploration and Curation of Microbrial Genomes D Vallenet, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... Biologie, Informatiqueet Mathématiques, 119, 2017 | 1 | 2017 |
| Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph G Gautreau, A Bazin, M Gachet, R Planel, L Burlot, M Dubois, A Perrin, ... PLOS Computational Biology 17 (12), e1009687, 2021 | | 2021 |
| PanGBank: depicting microbial species diversity via PPanGGOLiN G Gautreau, A Bazin, R Planel, M Gachet, M Dubois, L Burlot, A Perrin, ... JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, 2019 | | 2019 |
| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis D Vallenet, A Calteau, S Cruveiller, M Dubois, A Lajus, D Roche, Z Rouy, ... Identification de marques épigénétiques marqueurs de prédisposition aux …, 2019 | | 2019 |
| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis C Médigue, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, 2018 | | 2018 |
| NETSYN: NETwork SYNteny, a new tool to help functional annotation B VIART, K BASTARD, G REBOUL, H PEREIRA, R PLANEL, M STAM, ... Comité de programme, 120, 0 | | |
| GenomeOnRails: depicting microbial species diversity via a pangenome graph G GAUTREAU, R PLANEL, A PERRIN, M TOUCHON, E ROCHA Comité de programme, 31, 0 | | |
