Adrian E Platts
Adrian E Platts
Dept. of Plant Biology & Dept. of Horticulture, Michigan State University
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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
P Cingolani, AE Platts, LL Wang, M Coon, T Nguyen, L Wang, SJ Land, ...
Fly 6 (2), 80-92, 2012
The butterfly plant arms-race escalated by gene and genome duplications
PP Edger, HM Heidel-Fischer, M Bekaert, J Rota, G Glöckner, AE Platts, ...
Proceedings of the National Academy of Sciences 112 (27), 8362-8366, 2015
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
T Slotte, KM Hazzouri, JA Ågren, D Koenig, F Maumus, YL Guo, K Steige, ...
Nature genetics 45 (7), 831-835, 2013
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ...
Nature genetics 45 (8), 891-898, 2013
Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences
A Arpanahi, M Brinkworth, D Iles, SA Krawetz, A Paradowska, AE Platts, ...
Genome research 19 (8), 1338-1349, 2009
Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs
AE Platts, DJ Dix, HE Chemes, KE Thompson, R Goodrich, JC Rockett, ...
Human molecular genetics 16 (7), 763-773, 2007
The rice paradox: multiple origins but single domestication in Asian rice
JY Choi, AE Platts, DQ Fuller, YI Hsing, RA Wing, MD Purugganan
Molecular biology and evolution 34 (4), 969-979, 2017
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower
PP Edger, R Smith, MR McKain, AM Cooley, M Vallejo-Marin, Y Yuan, ...
The Plant Cell 29 (9), 2150-2167, 2017
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris
GM Douglas, G Gos, KA Steige, A Salcedo, K Holm, EB Josephs, ...
Proceedings of the National Academy of Sciences 112 (9), 2806-2811, 2015
Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora
RJ Williamson, EB Josephs, AE Platts, KM Hazzouri, A Haudry, ...
PLOS Genetics 10 (9), e1004622, 2014
Identification of human sperm transcripts as candidate markers of male fertility
C Lalancette, AE Platts, GD Johnson, BR Emery, DT Carrell, SA Krawetz
Journal of molecular medicine 87, 735-748, 2009
The strength and pattern of natural selection on gene expression in rice
SC Groen, I Ćalić, Z Joly-Lopez, AE Platts, JY Choi, M Natividad, K Dorph, ...
Nature 578 (7796), 572-576, 2020
Differential nuclear scaffold/matrix attachment marks expressed genes
AK Linnemann, AE Platts, SA Krawetz
Human molecular genetics 18 (4), 645-654, 2009
Secondary evolution of a self-incompatibility locus in the Brassicaceae genus Leavenworthia
SC Chantha, AC Herman, AE Platts, X Vekemans, DJ Schoen
PLOS Biology 11 (5), e1001560, 2013
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)
Q Qiao, PP Edger, L Xue, L Qiong, J Lu, Y Zhang, Q Cao, AE Yocca, ...
Proceedings of the National Academy of Sciences 118 (45), e2105431118, 2021
Improvement in the cast structure of Sm(2)Fe(17) alloys by niobium additions
AE Platts, IR Harris, JMD Coey
Journal of alloys and compounds 185 (2), 251-258, 1992
Real-time PCR quantification using a variable reaction efficiency model
AE Platts, GD Johnson, AK Linnemann, SA Krawetz
Analytical biochemistry 380 (2), 315-322, 2008
Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex
D Ottaviani, E Lever, R Mitter, T Jones, T Forshew, R Christova, ...
Genome research 18 (11), 1778-1786, 2008
In-silico prediction and observations of nuclear matrix attachment
AE Platts, AK Quayle, SA Krawetz
Cellular & molecular biology letters 11, 191-213, 2006
Blueprint for Phasing and Assembling the Genomes of Heterozygous Polyploids: Application to the Octoploid Genome of Strawberry
MA Hardigan, MJ Feldmann, DD Pincot, RA Famula, MV Vachev, ...
bioRxiv, 2021
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