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Dong Song
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Year
The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins
D Song, R Luo, HF Chen
Journal of chemical information and modeling 57 (5), 1166-1178, 2017
1652017
ff14IDPs force field improving the conformation sampling of intrinsically disordered proteins
D Song, W Wang, W Ye, D Ji, R Luo, HF Chen
Chemical biology & drug design 89 (1), 5-15, 2017
722017
Intrinsically disordered protein‐specific force field CHARMM 36 IDPSFF
H Liu, D Song, H Lu, R Luo, HF Chen
Chemical biology & drug design 92 (4), 1722-1735, 2018
622018
Somatic MAP3K3 mutation defines a subclass of cerebral cavernous malformation
J Weng, Y Yang, D Song, R Huo, H Li, Y Chen, Y Nam, Q Zhou, Y Jiao, ...
The American Journal of Human Genetics 108 (5), 942-950, 2021
592021
Environment-specific force field for intrinsically disordered and ordered proteins
D Song, H Liu, R Luo, HF Chen
Journal of chemical information and modeling 60 (4), 2257-2267, 2020
492020
The landscape of protein tyrosine phosphatase (Shp2) and cancer
AU Rehman, MU Rahman, MT Khan, S Saud, H Liu, D Song, P Sultana, ...
Current Pharmaceutical Design 24 (32), 3767-3777, 2018
432018
Extensive tests and evaluation of the CHARMM36IDPSFF force field for intrinsically disordered proteins and folded proteins
H Liu, D Song, Y Zhang, S Yang, R Luo, HF Chen
Physical Chemistry Chemical Physics 21 (39), 21918-21931, 2019
412019
Driving axon regeneration by orchestrating neuronal and non-neuronal innate immune responses via the IFNγ-cGAS-STING axis
X Wang, C Yang, X Wang, J Miao, W Chen, Y Zhou, Y Xu, Y An, A Cheng, ...
Neuron 111 (2), 236-255. e7, 2023
222023
De novo germline and somatic variants convergently promote endothelial-to-mesenchymal transition in simplex brain arteriovenous malformation
H Li, Y Nam, R Huo, W Fu, B Jiang, Q Zhou, D Song, Y Yang, Y Jiao, ...
Circulation research 129 (9), 825-839, 2021
202021
Characterization of a recombinant thermotolerant argonaute protein as an endonuclease by broad guide utilization
Y Chong, Q Liu, F Huang, D Song, Y Feng
Bioresources and Bioprocessing 6, 1-10, 2019
102019
The trimeric Hef-associated nuclease HAN is a 3′→ 5′ exonuclease and is probably involved in DNA repair
L Feng, CC Chang, D Song, C Jiang, Y Song, CF Wang, W Deng, YJ Zou, ...
Nucleic acids research 46 (17), 9027-9043, 2018
92018
Selectivity mechanism of ATP‐competitive inhibitors for PKB and PKA
K Wu, J Pang, D Song, Y Zhu, C Wu, T Shao, H Chen
Chemical Biology & Drug Design 86 (1), 9-18, 2015
72015
Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression
RJ Leeman-Neill, D Song, J Bizarro, L Wacheul, G Rothschild, S Singh, ...
Nature genetics 55 (12), 2160-2174, 2023
62023
CELLO: a longitudinal data analysis toolbox untangling cancer evolution
B Jiang, D Song, Q Mu, J Wang
Quantitative Biology 8 (3), 256-266, 2020
52020
Identifying predictors of glioma evolution from longitudinal sequencing
Q Mu, R Chai, B Pang, Y Yang, H Liu, Z Zhao, Z Bao, D Song, Z Zhu, ...
Science translational medicine 15 (716), eadh4181, 2023
22023
Synthesis and degradation of the cyclic dinucleotide messenger c‐di‐AMP in the hyperthermophilic archaeon Pyrococcus yayanosii
Z Jin, D Song, WW Wang, L Feng, ZX Li, HF Chen, X Xiao, XP Liu
Protein Science 32 (12), e4829, 2023
2023
Somatic GJA4 mutation in intracranial extra-axial cavernous hemangiomas
R Huo, Y Yang, H Xu, S Zhao, D Song, J Weng, R Ma, Y Sun, J Wang, ...
Stroke and Vascular Neurology 8 (6), 2023
2023
Mechanism Underlying the Bypass of Apurinic/Pyrimidinic Site Analogs by Sulfolobus acidocaldarius DNA Polymerase IV
QY Huang, D Song, WW Wang, L Peng, HF Chen, X Xiao, XP Liu
International Journal of Molecular Sciences 23 (5), 2729, 2022
2022
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Articles 1–18