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Mark Borodovsky
Mark Borodovsky
Regents' Professor, Georgia Tech
Verified email at gatech.edu - Homepage
Title
Cited by
Cited by
Year
The complete genome sequence of the gastric pathogen Helicobacter pylori
JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ...
Nature 388 (6642), 539-547, 1997
41711997
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
34122016
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
CJ Bult, O White, GJ Olsen, L Zhou, RD Fleischmann, GG Sutton, ...
Science 273 (5278), 1058-1073, 1996
32481996
cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors
S Censini, C Lange, Z Xiang, JE Crabtree, P Ghiara, M Borodovsky, ...
Proceedings of the National Academy of Sciences 93 (25), 14648-14653, 1996
24731996
GeneMark. hmm: new solutions for gene finding
AV Lukashin, M Borodovsky
Nucleic acids research 26 (4), 1107-1115, 1998
18581998
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
J Besemer, A Lomsadze, M Borodovsky
Nucleic acids research 29 (12), 2607-2618, 2001
18482001
The genome of woodland strawberry (Fragaria vesca)
V Shulaev, DJ Sargent, RN Crowhurst, TC Mockler, O Folkerts, ...
Nature genetics 43 (2), 109-116, 2011
12082011
Ab initio gene identification in metagenomic sequences
W Zhu, A Lomsadze, M Borodovsky
Nucleic acids research 38 (12), e132-e132, 2010
10602010
GENMARK: parallel gene recognition for both DNA strands
M Borodovsky, J McIninch
Computers & chemistry 17 (2), 123-133, 1993
8981993
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
J Besemer, M Borodovsky
Nucleic acids research 33 (suppl_2), W451-W454, 2005
8342005
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
V Ter-Hovhannisyan, A Lomsadze, YO Chernoff, M Borodovsky
Genome research 18 (12), 1979-1990, 2008
7262008
BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke
Bioinformatics 32 (5), 767-769, 2016
6892016
Gene identification in novel eukaryotic genomes by self-training algorithm
A Lomsadze, V Ter-Hovhannisyan, YO Chernoff, M Borodovsky
Nucleic acids research 33 (20), 6494-6506, 2005
6742005
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
GA Wu, S Prochnik, J Jenkins, J Salse, U Hellsten, F Murat, X Perrier, ...
Nature biotechnology 32 (7), 656-662, 2014
5262014
The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex
G Blanc, G Duncan, I Agarkova, M Borodovsky, J Gurnon, A Kuo, ...
The Plant Cell 22 (9), 2943-2955, 2010
5062010
Heuristic approach to deriving models for gene finding
J Besemer, M Borodovsky
Nucleic acids research 27 (19), 3911-3920, 1999
4431999
Pan genome of the phytoplankton Emiliania underpins its global distribution
BA Read, J Kegel, MJ Klute, A Kuo, SC Lefebvre, F Maumus, C Mayer, ...
Nature 499 (7457), 209-213, 2013
4382013
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JE Stajich, SK Wilke, D Ahrén, CH Au, BW Birren, M Borodovsky, C Burns, ...
Proceedings of the National Academy of Sciences 107 (26), 11889-11894, 2010
4372010
Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
RL Tatusov, AR Mushegian, P Bork, NP Brown, WS Hayes, M Borodovsky, ...
Current biology 6 (3), 279-291, 1996
3671996
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
G Blanc, I Agarkova, J Grimwood, A Kuo, A Brueggeman, DD Dunigan, ...
Genome biology 13 (5), 1-12, 2012
3092012
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