X C Morgan
X C Morgan
Harvard T.H. Chan School of Public Health. Former Sr. Lecturer of Microbiology, Otago University
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Cited by
Cited by
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
XC Morgan, TL Tickle, H Sokol, D Gevers, KL Devaney, DV Ward, ...
Genome biology 13 (9), 1-18, 2012
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
N Segata, D Börnigen, XC Morgan, C Huttenhower
Nature communications 4 (1), 2304, 2013
Sequencing and beyond: integrating molecular'omics' for microbial community profiling
EA Franzosa, T Hsu, A Sirota-Madi, A Shafquat, G Abu-Ali, XC Morgan, ...
Nature Reviews Microbiology 13 (6), 360-372, 2015
Chapter 12: Human microbiome analysis
XC Morgan, C Huttenhower
PLoS computational biology 8 (12), e1002808, 2012
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ...
The ISME journal 8 (7), 1403-1417, 2014
Computational meta'omics for microbial community studies
N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ...
Molecular systems biology 9 (1), 666, 2013
Biodiversity and functional genomics in the human microbiome
XC Morgan, N Segata, C Huttenhower
Trends in genetics 29 (1), 51-58, 2013
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
K Yasuda, K Oh, B Ren, TL Tickle, EA Franzosa, LM Wachtman, AD Miller, ...
Cell host & microbe 17 (3), 385-391, 2015
Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes
M Yassour, MY Lim, HS Yun, TL Tickle, J Sung, YM Song, K Lee, ...
Genome medicine 8 (1), 1-14, 2016
bioBakery: a meta’omic analysis environment
LJ McIver, G Abu-Ali, EA Franzosa, R Schwager, XC Morgan, L Waldron, ...
Bioinformatics 34 (7), 1235-1237, 2018
Meta'omic analytic techniques for studying the intestinal microbiome
XC Morgan, C Huttenhower
Gastroenterology 146 (6), 1437-1448. e1, 2014
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
XC Morgan, B Kabakchiev, L Waldron, AD Tyler, TL Tickle, R Milgrom, ...
Genome biology 16 (1), 1-15, 2015
Microbial biogeography of 925 geothermal springs in New Zealand
JF Power, CR Carere, CK Lee, GLJ Wakerley, DW Evans, M Button, ...
Nature communications 9 (1), 2876, 2018
Experimental design and quantitative analysis of microbial community multiomics
H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower
Genome biology 18 (1), 1-16, 2017
Diverse hydrogen production and consumption pathways influence methane production in ruminants
C Greening, R Geier, C Wang, LC Woods, SE Morales, MJ McDonald, ...
The ISME journal 13 (10), 2617-2632, 2019
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
J Kim, AA Bhinge, XC Morgan, VR Iyer
Nature Methods 2 (1), 47-53, 2005
Urban transit system microbial communities differ by surface type and interaction with humans and the environment
T Hsu, R Joice, J Vallarino, G Abu-Ali, EM Hartmann, A Shafquat, ...
Msystems 1 (3), 10.1128/msystems. 00018-16, 2016
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