Andrew Maltez Thomas
Andrew Maltez Thomas
Unknown affiliation
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Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature Medicine, 1-12, 2021
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism
JL Fachi, J de Souza Felipe, LP Pral, BK da Silva, RO Corrêa, ...
Cell Reports 27 (3), 750-761. e7, 2019
Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer
L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ...
Nature Medicine 28 (2), 315-324, 2022
Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics
LP Antunes, LF Martins, RV Pereira, AM Thomas, D Barbosa, LN Lemos, ...
Scientific Reports 6, 2016
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology 41 (11), 1633-1644, 2023
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ...
Nature Medicine 28 (3), 535-544, 2022
Multiple levels of the unknown in microbiome research
AM Thomas, N Segata
BMC biology 17 (1), 48, 2019
Tissue-associated bacterial alterations in rectal carcinoma patients revealed by 16S rRNA community profiling
AM Thomas, EC de Jesus, A Lopes, S Aguiar Junior, MD Begnami, ...
Frontiers in Cellular and Infection Microbiology 6, 179, 2016
Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma
G Ianiro, E Rossi, AM Thomas, G Schinzari, L Masucci, G Quaranta, ...
Nature communications 11 (1), 4333, 2020
Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms
AM Thomas, FO Gleber-Netto, GR Fernandes, M Amorim, LF Barbosa, ...
BMC microbiology 14 (1), 1, 2014
Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment
S Terrisse, L Derosa, V Iebba, F Ghiringhelli, I Vaz-Luis, G Kroemer, ...
Cell Death & Differentiation 28 (9), 2778-2796, 2021
Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples
S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, AR Luc, P Manghi, ...
mSystems 4 (5), e00289-19, 2019
Gut microbiota profile of obese diabetic women submitted to Roux-en-Y gastric bypass and its association with food intake and postoperative diabetes remission
K Al Assal, E Prifti, E Belda, P Sala, K Clément, MC Dao, J Doré, ...
Nutrients 12 (2), 278, 2020
A microbiota-modulated checkpoint directs immunosuppressive intestinal T cells into cancers
M Fidelle, C Rauber, C Alves Costa Silva, AL Tian, I Lahmar, ...
Science 380 (6649), eabo2296, 2023
Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness
E Mendes, BG Acetturi, AM Thomas, FS Martins, AR Crisma, G Murata, ...
Frontiers in Microbiology 8, 1732, 2017
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