|Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer|
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
|Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation|
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
|Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3|
F Beghini, LJ McIver, A Blanco-Míguez, L Dubois, F Asnicar, S Maharjan, ...
|Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals|
F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ...
Nature Medicine, 1-12, 2021
|Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0|
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
|Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics|
LP Antunes, LF Martins, RV Pereira, AM Thomas, D Barbosa, LN Lemos, ...
Scientific Reports 6, 2016
|Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism|
JL Fachi, J de Souza Felipe, LP Pral, BK da Silva, RO Corrêa, ...
Cell Reports 27 (3), 750-761. e7, 2019
|Tissue-associated bacterial alterations in rectal carcinoma patients revealed by 16S rRNA community profiling|
AM Thomas, EC de Jesus, A Lopes, S Aguiar Junior, MD Begnami, ...
Frontiers in Cellular and Infection Microbiology 6, 179, 2016
|A global metagenomic map of urban microbiomes and antimicrobial resistance|
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
|Multiple levels of the unknown in microbiome research|
AM Thomas, N Segata
BMC biology 17 (1), 48, 2019
|Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms|
AM Thomas, FO Gleber-Netto, GR Fernandes, M Amorim, LF Barbosa, ...
BMC microbiology 14 (1), 1, 2014
|Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer|
L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ...
Nature Medicine 28 (2), 315-324, 2022
|Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma|
G Ianiro, E Rossi, AM Thomas, G Schinzari, L Masucci, G Quaranta, ...
Nature communications 11 (1), 4333, 2020
|Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma|
KA Lee, AM Thomas, LA Bolte, JR Björk, LK de Ruijter, F Armanini, ...
Nature Medicine 28 (3), 535-544, 2022
|Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples|
S Tarallo, G Ferrero, G Gallo, A Francavilla, G Clerico, AR Luc, P Manghi, ...
mSystems 4 (5), e00289-19, 2019
|Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment|
S Terrisse, L Derosa, V Iebba, F Ghiringhelli, I Vaz-Luis, G Kroemer, ...
Cell Death & Differentiation 28 (9), 2778-2796, 2021
|Gut microbiota profile of obese diabetic women submitted to Roux-en-Y gastric bypass and its association with food intake and postoperative diabetes remission|
K Al Assal, E Prifti, E Belda, P Sala, K Clément, MC Dao, J Doré, ...
Nutrients 12 (2), 278, 2020
|Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness|
E Mendes, BG Acetturi, AM Thomas, FS Martins, AR Crisma, G Murata, ...
Frontiers in Microbiology 8, 1732, 2017
|Tributyrin Attenuates Metabolic and Inflammatory Changes Associated with Obesity through a GPR109A-Dependent Mechanism|
FT Sato, YA Yap, AR Crisma, M Portovedo, GM Murata, SM Hirabara, ...
Cells 9 (9), 2007, 2020
|Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients|
GS Kinker, AM Thomas, VJ Carvalho, FP Lima, A Fujita
Scientific Reports 6, 2016