Thomas L. Madden
Thomas L. Madden
Staff Scientist, NCBI, NLM, NIH
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, ...
Nucleic acids research 25 (17), 3389-3402, 1997
798071997
BLAST+: architecture and applications
C Camacho, G Coulouris, V Avagyan, N Ma, J Papadopoulos, K Bealer, ...
BMC bioinformatics 10 (1), 1-9, 2009
100642009
Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction
J Ye, G Coulouris, I Zaretskaya, I Cutcutache, S Rozen, TL Madden
BMC bioinformatics 13 (1), 1-11, 2012
40642012
Database resources of the national center for biotechnology information
EW Sayers, T Barrett, DA Benson, E Bolton, SH Bryant, K Canese, ...
Nucleic acids research 39 (suppl_1), D38-D51, 2010
3480*2010
Database resources of the national center for biotechnology information
NCBI Resource Coordinators
Nucleic acids research 45 (D1), D12-D17, 2016
25542016
NCBI BLAST: a better web interface
M Johnson, I Zaretskaya, Y Raytselis, Y Merezhuk, S McGinnis, ...
Nucleic acids research 36 (suppl_2), W5-W9, 2008
24222008
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
TA Tatusova, TL Madden
FEMS microbiology letters 174 (2), 247-250, 1999
22841999
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 36 (suppl_1), D13-D21, 2007
19492007
BLAST: at the core of a powerful and diverse set of sequence analysis tools
S McGinnis, TL Madden
Nucleic acids research 32 (suppl_2), W20-W25, 2004
16552004
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer, L Aravind, TL Madden, S Shavirin, JL Spouge, YI Wolf, ...
Nucleic acids research 29 (14), 2994-3005, 2001
15032001
Database resources of the national center for biotechnology information
Nucleic acids research 46 (D1), D8-D13, 2017
1148*2017
Database resources of the National Center for Biotechnology
DL Wheeler, DM Church, S Federhen, AE Lash, TL Madden, JU Pontius, ...
Nucleic acids research 31 (1), 28-33, 2003
10352003
Database indexing for production MegaBLAST searches
A Morgulis, G Coulouris, Y Raytselis, TL Madden, R Agarwala, ...
Bioinformatics 24 (16), 1757-1764, 2008
9532008
The BLAST Sequence Analysis Tool
J McEntyre, J Ostell, T Madden
National Center for Biotechnology Information (US), 2002
801*2002
BLAST: a more efficient report with usability improvements
GM Boratyn, C Camacho, PS Cooper, G Coulouris, A Fong, N Ma, ...
Nucleic acids research 41 (W1), W29-W33, 2013
6972013
IgBLAST: an immunoglobulin variable domain sequence analysis tool
J Ye, N Ma, TL Madden, JM Ostell
Nucleic acids research 41 (W1), W34-W40, 2013
6842013
Domain enhanced lookup time accelerated BLAST
GM Boratyn, AA Schäffer, R Agarwala, SF Altschul, DJ Lipman, ...
Biology direct 7 (1), 1-14, 2012
6432012
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, V Chetvernin, ...
Nucleic acids research 34 (suppl_1), D173-D180, 2006
5782006
Database resources of the national center for biotechnology information
DL Wheeler, T Barrett, DA Benson, SH Bryant, K Canese, DM Church, ...
Nucleic acids research 33 (suppl_1), D39-D45, 2005
5762005
PowerBLAST: a new network BLAST application for interactive or automated sequence analysis and annotation
J Zhang, TL Madden
Genome research 7 (6), 649-656, 1997
5471997
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Articles 1–20