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Bhavya Papudeshi
Bhavya Papudeshi
Verified email at flinders.edu.au
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Cited by
Year
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
B Papudeshi, JM Haggerty, M Doane, MM Morris, K Walsh, DT Beattie, ...
BMC genomics 18, 1-13, 2017
642017
The skin microbiome of the common thresher shark (Alopias vulpinus) has low taxonomic and gene function β‐diversity
MP Doane, JM Haggerty, D Kacev, B Papudeshi, EA Dinsdale
Environmental Microbiology Reports 9 (4), 357-373, 2017
602017
The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge
MP Doane, MM Morris, B Papudeshi, L Allen, D Pande, JM Haggerty, ...
Microbiome 8, 1-15, 2020
472020
Modeling of the coral microbiome: the influence of temperature and microbial network
LFO Lima, M Weissman, M Reed, B Papudeshi, AT Alker, MM Morris, ...
MBio 11 (2), 10.1128/mbio. 02691-19, 2020
462020
Nearshore Pelagic Microbial Community Abundance Affects Recruitment Success of Giant Kelp, Macrocystis pyrifera
MM Morris, JM Haggerty, BN Papudeshi, AA Vega, MS Edwards, ...
Frontiers in microbiology 7, 1800, 2016
312016
Coral and seawater metagenomes reveal key microbial functions to coral health and ecosystem functioning shaped at reef scale
LFO Lima, AT Alker, B Papudeshi, MM Morris, RA Edwards, SJ De Putron, ...
Microbial Ecology 86 (1), 392-407, 2023
162023
The human gut virome: composition, colonization, interactions, and impacts on human health
E Pargin, MJ Roach, A Skye, B Papudeshi, LK Inglis, V Mallawaarachchi, ...
Frontiers in Microbiology 14, 963173, 2023
132023
Ten simple rules and a template for creating workflows-as-applications
MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ...
PLoS computational biology 18 (12), e1010705, 2022
112022
Phables: from fragmented assemblies to high-quality bacteriophage genomes
V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ...
Bioinformatics 39 (10), btad586, 2023
92023
The StkSR Two-Component System Influences Colistin Resistance in Acinetobacter baumannii
SK Giles, UH Stroeher, B Papudeshi, RA Edwards, JAP Carlson-Jones, ...
Microorganisms 10 (5), 985, 2022
62022
Epidermal Microbiomes of Leopard Sharks (Triakis semifasciata) Are Consistent across Captive and Wild Environments
AZ Goodman, B Papudeshi, MP Doane, M Mora, E Kerr, M Torres, ...
Microorganisms 10 (10), 2081, 2022
52022
The promise and pitfalls of prophages
JC McKerral, B Papudeshi, LK Inglis, MJ Roach, P Decewicz, K McNair, ...
bioRxiv, 2023
42023
Phage diving: an exploration of the carcharhinid shark epidermal virome
RD Hesse, M Roach, EN Kerr, B Papudeshi, LFO Lima, AZ Goodman, ...
Viruses 14 (9), 1969, 2022
42022
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy
SR Grigson, SK Giles, RA Edwards, B Papudeshi
Clinical Infectious Diseases 77 (Supplement_5), S352-S359, 2023
32023
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2
B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ...
Microbial Genomics 9 (9), 001100, 2023
32023
A voice for bioinformatics
CL Ganote, SA Sanders, BN Papudeshi, PD Blood, TG Doak
Proceedings of the Practice and Experience in Advanced Research Computing …, 2017
32017
Dnaapler: A tool to reorient circular microbial genomes
G Bouras, SR Grigson, B Papudeshi, V Mallawaarachchi, MJ Roach
Journal of Open Source Software 9 (93), 5968, 2024
22024
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies
G Bouras, G Houtak, RR Wick, V Mallawaarachchi, MJ Roach, ...
bioRxiv, 2023
12023
Host association and spatial proximity shape but do not constrain population structure in the mutualistic symbiont Xenorhabdus bovienii
B Papudeshi, DB Rusch, D VanInsberghe, CM Lively, RA Edwards, ...
Mbio 14 (3), e00434-23, 2023
12023
Stingray epidermal microbiomes are species-specific with local adaptations
EN Kerr, B Papudeshi, M Haggerty, N Wild, AZ Goodman, LFO Lima, ...
Frontiers in Microbiology 14, 1031711, 2023
12023
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Articles 1–20