Radka Svobodová
Radka Svobodová
E-mailová adresa ověřena na: chemi.muni.cz
Název
Citace
Citace
Rok
PDBsum: Structural summaries of PDB entries
RA Laskowski, J Jabłońska, L Pravda, RS Vařeková, JM Thornton
Protein science 27 (1), 129-134, 2018
3822018
Resistin in rheumatoid arthritis synovial tissue, synovial fluid and serum
L Šenolt, D Housa, Z Vernerova, T Jirasek, R Svobodova, D Veigl, ...
Annals of the rheumatic diseases 66 (4), 458-463, 2007
3032007
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
D Sehnal, RS Vařeková, K Berka, L Pravda, V Navrátilová, P Banáš, ...
Journal of cheminformatics 5 (1), 1-13, 2013
2122013
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research 47 (D1), D520-D528, 2019
2112019
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
1242016
MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels
K Berka, O Hanák, D Sehnal, P Banáš, V Navratilova, D Jaiswal, ...
Nucleic acids research 40 (W1), W222-W227, 2012
1142012
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data
D Sehnal, M Deshpande, RS Vařeková, S Mir, K Berka, A Midlik, L Pravda, ...
Nature methods 14 (12), 1121-1122, 2017
1012017
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)
L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ...
Nucleic acids research 46 (W1), W368-W373, 2018
952018
Four simple recommendations to encourage best practices in research software
RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ...
F1000Research 6, 2017
752017
Anatomy of enzyme channels
L Pravda, K Berka, RS Vařeková, D Sehnal, P Banáš, RA Laskowski, ...
BMC bioinformatics 15 (1), 1-8, 2014
752014
Predicting pKa Values of Substituted Phenols from Atomic Charges: Comparison of Different Quantum Mechanical Methods and Charge Distribution Schemes
R Svobodová Vařeková, S Geidl, CM Ionescu, O Skrehota, M Kudera, ...
Journal of chemical information and modeling 51 (8), 1795-1806, 2011
602011
Outcome of the first wwPDB/CCDC/D3R ligand validation workshop
PD Adams, K Aertgeerts, C Bauer, JA Bell, HM Berman, TN Bhat, ...
Structure 24 (4), 502-508, 2016
532016
PDBe: improved findability of macromolecular structure data in the PDB
DR Armstrong, JM Berrisford, MJ Conroy, A Gutmanas, S Anyango, ...
Nucleic acids research 48 (D1), D335-D343, 2020
462020
Electronegativity equalization method: parameterization and validation for large sets of organic, organohalogene and organometal molecule
RS Varekova, Z Jirouskova, J Vanek, S Suchomel, J Koca
International Journal of Molecular Sciences 8 (7), 572-582, 2007
452007
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules
CM Ionescu, D Sehnal, FL Falginella, P Pant, L Pravda, T Bouchal, ...
Journal of cheminformatics 7 (1), 1-13, 2015
442015
Seroprevalence and specificity of NMO-IgG (anti-aquaporin 4 antibodies) in patients with neuropsychiatric systemic lupus erythematosus
J Závada, P Nytrova, KP Wandinger, S Jarius, R Svobodova, C Probst, ...
Rheumatology international 33 (1), 259-263, 2013
402013
Validation of ligands in macromolecular structures determined by X-ray crystallography
OS Smart, V Horský, S Gore, R Svobodová Vařeková, V Bendová, ...
Acta Crystallographica Section D: Structural Biology 74 (3), 228-236, 2018
342018
Electronegativity equalization method: parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme.
Z Jirouskova, RS Varekova, J Vanek, J Koca
Journal of computational chemistry 30 (7), 1174-1178, 2009
332009
High-quality and universal empirical atomic charges for chemoinformatics applications
S Geidl, T Bouchal, T Raček, R Svobodová Vařeková, V Hejret, A Křenek, ...
Journal of cheminformatics 7 (1), 1-10, 2015
292015
CATH: increased structural coverage of functional space
I Sillitoe, N Bordin, N Dawson, VP Waman, P Ashford, HM Scholes, ...
Nucleic acids research 49 (D1), D266-D273, 2021
282021
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Články 1–20