Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization HJ Dai, PT Lai, YC Chang, RTH Tsai Journal of cheminformatics 7, 1-10, 2015 | 91 | 2015 |
BioRED: a rich biomedical relation extraction dataset L Luo, PT Lai, CH Wei, CN Arighi, Z Lu Briefings in Bioinformatics 23 (5), bbac282, 2022 | 68 | 2022 |
Opportunities and challenges for ChatGPT and large language models in biomedicine and health S Tian, Q Jin, L Yeganova, PT Lai, Q Zhu, X Chen, Y Yang, Q Chen, ... Briefings in Bioinformatics 25 (1), bbad493, 2024 | 59 | 2024 |
Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles HJ Dai, PT Lai, RTH Tsai IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 412-420, 2010 | 46 | 2010 |
Biomedical named entity recognition and linking datasets: survey and our recent development MS Huang, PT Lai, PY Lin, YT You, RTH Tsai, WL Hsu Briefings in Bioinformatics 21 (6), 2219-2238, 2020 | 38 | 2020 |
BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer PT Lai, Z Lu Bioinformatics 36 (24), 5678-5685, 2020 | 36 | 2020 |
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology L Luo, S Yan, PT Lai, D Veltri, A Oler, S Xirasagar, R Ghosh, M Similuk, ... Bioinformatics 37 (13), 1884-1890, 2021 | 32 | 2021 |
PubMed-EX: a web browser extension to enhance PubMed search with text mining features RTH Tsai, HJ Dai, PT Lai, CH Huang Bioinformatics 25 (22), 3031-3032, 2009 | 30 | 2009 |
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature YC Fang, PT Lai, HJ Dai, WL Hsu BMC bioinformatics 12, 1-8, 2011 | 29 | 2011 |
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features RTH Tsai, PT Lai, HJ Dai, CH Huang, YY Bow, YC Chang, WH Pan, ... BMC bioinformatics 10, 1-11, 2009 | 23 | 2009 |
Revised JNLPBA corpus: A revised version of biomedical NER corpus for relation extraction task MS Huang, PT Lai, RTH Tsai, WL Hsu arXiv preprint arXiv:1901.10219, 2019 | 18 | 2019 |
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information HJ Dai, CY Chen, CY Wu, PT Lai, RTH Tsai, WL Hsu Journal of the American Medical Informatics Association 19 (5), 888-896, 2012 | 17 | 2012 |
BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text PT Lai, YY Lo, MS Huang, YC Hsiao, RTH Tsai Database 2016, baw064, 2016 | 14 | 2016 |
A hybrid system for temporal relation extraction from discharge summaries YL Yang, PT Lai, RTH Tsai Technologies and Applications of Artificial Intelligence: 19th International …, 2014 | 13 | 2014 |
Statistical principle-based approach for gene and protein related object recognition PT Lai, MS Huang, TH Yang, WL Hsu, RTH Tsai Journal of cheminformatics 10, 1-9, 2018 | 12 | 2018 |
Using contextual information to clarify gene normalization ambiguity PT Lai, YY Bow, CH Huang, HJ Dai, RTH Tsai, WL Hsu 2009 IEEE International Conference on Information Reuse & Integration, 1-5, 2009 | 10 | 2009 |
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning L Luo, CH Wei, PT Lai, R Leaman, Q Chen, Z Lu Bioinformatics 39 (5), btad310, 2023 | 9 | 2023 |
Extracting drug-protein interaction using an ensemble of biomedical pre-trained language models through sequence labeling and text classification techniques L Luo, PT Lai, CH Wei, Z Lu Proceedings of the BioCreative VII challenge evaluation workshop, 26-30, 2021 | 8 | 2021 |
NCUIISR system for BioCreative BEL task 1 PT Lai, YY Lo, MS Huang, YC Hsiao, RTH Tsai Proceedings of the fifth BioCreative challenge evaluation workshop, 347-350, 2015 | 8 | 2015 |
MET network in PubMed: a text-mined network visualization and curation system HJ Dai, CH Su, PT Lai, MS Huang, J Jonnagaddala, T Rose Jue, S Rao, ... Database 2016, baw090, 2016 | 7 | 2016 |