Benjamin Haibe-Kains

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Christos SotiriouUniversité Libre de BruxellesVerified email at bordet.be
Christine DesmedtKU LeuvenVerified email at kuleuven.be
John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Gianluca BontempiFull professor, Machine Learning Group, Université Libre de BruxellesVerified email at ulb.ac.be
Hugo AertsProfessor @ Harvard | Director, AI in Medicine (AIM) @ MGB | Professor @ MaastrichtUVerified email at dfci.harvard.edu
Petr SmirnovPostdoctoral Fellow, EMBLVerified email at embl.de
Anna GoldenbergScientist, SickKids Research Institute; Assistant Professor Department of Computer Science, University of TorontoVerified email at utoronto.ca
Mauro DelorenziSIB Swiss Institute of BioinformaticsVerified email at unil.ch
Zhaleh SafikhaniPost doctoral fellowVerified email at utoronto.ca
Marc BuyseChief Scientific Officer, IDDIVerified email at iddi.com
Michail IgnatiadisMedical Oncology Department, Institut Jules Bordet, Université Libre de BruxellesVerified email at bordet.be
Patrick GrossmannPh.D. Candidate conducting research at Harvard Medical School, Dana-Farber Cancer Institute, BWHVerified email at jimmy.harvard.edu
Emmanuel Rios VelazquezBusiness Development Manager | AI-Powered Lung Medical Image Analysis @ThironaVerified email at thirona.eu
Fatima CardosoBreast Unit, Champalimaud Clinical Center, Champalimaud Foundation, Lisbon, PortugalVerified email at fundacaochampalimaud.pt
Andre DekkerProfessor of Clinical Data Science, MAASTRO Clinic, Maastricht University, GROW, Maastricht UMC+Verified email at maastro.nl
Philippe LambinProfessor of Precision Medicine, Maastricht University & Scientist ULBVerified email at maastrichtuniversity.nl
Philippe BedardPrincess Margaret Cancer CentreVerified email at uhn.ca
Chintan ParmarAstraZeneca (past: PathAI, Novartis, Harvard-DFCI-BWH, ISI-Kolkata, DAIICT)Verified email at astrazeneca.com
Sandeep K. SinghalAssociate Professor and ScientistVerified email at und.edu
Adrian L HarrisProfessor of Medical Oncology, Oxford UniversityVerified email at oncology.ox.ac.uk

Benjamin Haibe-Kains

Scientist (Principal Investigator), Princess Margaret Cancer Centre, University Health Network

Verified email at uhnresearch.ca - Homepage

Bioinformatics Machine Learning Genomics Computational Biology Biomedicine


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Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ... Nature communications 5 (1), 4006, 2014	5253	2014
Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis C Sotiriou, P Wirapati, S Loi, A Harris, S Fox, J Smeds, H Nordgren, ... Journal of the National Cancer Institute 98 (4), 262-272, 2006	2388	2006
Similarity network fusion for aggregating data types on a genomic scale B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ... Nature methods 11 (3), 333-337, 2014	1981	2014
CD4⁺ follicular helper T cell infiltration predicts breast cancer survival C Gu-Trantien, S Loi, S Garaud, C Equeter, M Libin, A De Wind, M Ravoet, ... The Journal of clinical investigation 123 (7), 2873-2892, 2013	1125	2013
Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series C Desmedt, F Piette, S Loi, Y Wang, F Lallemand, B Haibe-Kains, G Viale, ... Clinical cancer research 13 (11), 3207-3214, 2007	1122	2007
Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures P Wirapati, C Sotiriou, S Kunkel, P Farmer, S Pradervand, B Haibe-Kains, ... Breast Cancer Research 10, 1-11, 2008	1064	2008
Biological processes associated with breast cancer clinical outcome depend on the molecular subtypes C Desmedt, B Haibe-Kains, P Wirapati, M Buyse, D Larsimont, ... Clinical cancer research 14 (16), 5158-5165, 2008	976	2008
Definition of clinically distinct molecular subtypes in estrogen receptor–positive breast carcinomas through genomic grade S Loi, B Haibe-Kains, C Desmedt, F Lallemand, AM Tutt, C Gillet, P Ellis, ... Journal of clinical oncology 25 (10), 1239-1246, 2007	956	2007
CT-based radiomic signature predicts distant metastasis in lung adenocarcinoma TP Coroller, P Grossmann, Y Hou, ER Velazquez, RTH Leijenaar, ... Radiotherapy and Oncology 114 (3), 345-350, 2015	803	2015
Robust radiomics feature quantification using semiautomatic volumetric segmentation C Parmar, E Rios Velazquez, R Leijenaar, M Jermoumi, S Carvalho, ... PloS one 9 (7), e102107, 2014	663	2014
Inconsistency in large pharmacogenomic studies B Haibe-Kains, N El-Hachem, NJ Birkbak, AC Jin, AH Beck, HJWL Aerts, ... Nature 504 (7480), 389-393, 2013	582	2013
Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution M Chan-Seng-Yue, JC Kim, GW Wilson, K Ng, EF Figueroa, GM O’Kane, ... Nature genetics 52 (2), 231-240, 2020	560	2020
CD73 promotes anthracycline resistance and poor prognosis in triple negative breast cancer S Loi, S Pommey, B Haibe-Kains, PA Beavis, PK Darcy, MJ Smyth, ... Proceedings of the National Academy of Sciences 110 (27), 11091-11096, 2013	559	2013
Radiomic feature clusters and prognostic signatures specific for lung and head & neck cancer C Parmar, RTH Leijenaar, P Grossmann, E Rios Velazquez, J Bussink, ... Scientific reports 5 (1), 11044, 2015	506	2015
survcomp: an R/Bioconductor package for performance assessment and comparison of survival models MS Schröder, AC Culhane, J Quackenbush, B Haibe-Kains Bioinformatics 27 (22), 3206-3208, 2011	451	2011
Elucidating prognosis and biology of breast cancer arising in young women using gene expression profiling HA Azim Jr, S Michiels, PL Bedard, SK Singhal, C Criscitiello, M Ignatiadis, ... Clinical cancer research 18 (5), 1341-1351, 2012	442	2012
Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen S Loi, B Haibe-Kains, C Desmedt, P Wirapati, F Lallemand, AM Tutt, ... BMC genomics 9, 1-12, 2008	433	2008
Transparency and reproducibility in artificial intelligence B Haibe-Kains, GA Adam, A Hosny, F Khodakarami, ... Nature 586 (7829), E14-E16, 2020	431	2020
PIK3CA mutations associated with gene signature of low mTORC1 signaling and better outcomes in estrogen receptor–positive breast cancer S Loi, B Haibe-Kains, S Majjaj, F Lallemand, V Durbecq, D Larsimont, ... Proceedings of the National Academy of Sciences 107 (22), 10208-10213, 2010	419	2010
Amplification of LAPTM4B and YWHAZ contributes to chemotherapy resistance and recurrence of breast cancer Y Li, L Zou, Q Li, B Haibe-Kains, R Tian, Y Li, C Desmedt, C Sotiriou, ... Nature medicine 16 (2), 214-218, 2010	404	2010

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