| Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons C Chaguza, A Coppi, R Earnest, D Ferguson, N Kerantzas, F Warner, ... Med 3 (5), 325-334. e4, 2022 | 84 | 2022 |
| High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children A Kamng’ona, J Hinds, N Bar-Zeev, K Gould, C Chaguza, C Msefula, ... BMC Infectious Diseases 15 (234), 2015 | 84 | 2015 |
| Mechanisms and impact of genetic recombination in the evolution of Streptococcus pneumoniae C Chaguza, JE Cornick, DB Everett Computational and structural biotechnology journal 13, 241-247, 2015 | 79 | 2015 |
| Emergence of double-and triple-gene reassortant G1P [8] rotaviruses possessing a DS-1-like backbone after rotavirus vaccine introduction in Malawi KC Jere, C Chaguza, N Bar-Zeev, J Lowe, C Peno, B Kumwenda, ... Journal of virology 92 (3), 10.1128/jvi. 01246-17, 2018 | 72 | 2018 |
| Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule C Chaguza, CP Andam, SR Harris, JE Cornick, M Yang, L Bricio-Moreno, ... mBio 7 (5), e01053-16, 2016 | 65 | 2016 |
| Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection C Chaguza, AM Hahn, ME Petrone, S Zhou, D Ferguson, MI Breban, ... Cell Reports Medicine 4 (2), 2023 | 58 | 2023 |
| Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting P Musicha, NA Feasey, AK Cain, T Kallonen, C Chaguza, C Peno, ... Journal of Antimicrobial Chemotherapy 72 (6), 1602-1609, 2017 | 51 | 2017 |
| Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation C Chaguza, M Senghore, E Bojang, RA Gladstone, SW Lo, PE Tientcheu, ... Nature communications 11 (1), 3442, 2020 | 42 | 2020 |
| Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages P Musicha, CL Msefula, AE Mather, C Chaguza, AK Cain, C Peno, ... Journal of Antimicrobial Chemotherapy 74 (5), 1223-1232, 2019 | 39 | 2019 |
| Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi C Chaguza, JE Cornick, CP Andam, RA Gladstone, M Alaerts, P Musicha, ... Vaccine 35 (35), 4594-4602, 2017 | 35 | 2017 |
| Pneumococcal within-host diversity during colonization, transmission and treatment G Tonkin-Hill, C Ling, C Chaguza, SJ Salter, P Hinfonthong, E Nikolaou, ... Nature Microbiology 7 (11), 1791-1804, 2022 | 32 | 2022 |
| Region specific diversification of the highly virulent serotype 1 streptococcus pneumoniae J Cornick, C Chaguza, S Harris, F Yalcin, M Senghore, AM Kiran, ... Microbial Genomics, 2015 | 31 | 2015 |
| Comparative genomic analysis of meningitis and bacteremia causing pneumococci identifies a common core genome B Kulohoma, J Cornick, C Chaguza, F Yalcin, S Harris, K Gray, A Kiran, ... Infection and Immunity, 2015 | 29 | 2015 |
| The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1 JE Cornick, ÖT Bishop, F Yalcin, AM Kiran, B Kumwenda, C Chaguza, ... Vaccine 35 (6), 972-980, 2017 | 28 | 2017 |
| Genomic epidemiology of penicillin-nonsusceptible pneumococci with nonvaccine serotypes causing invasive disease in the United States CP Andam, PK Mitchell, A Callendrello, Q Chang, J Corander, C Chaguza, ... Journal of clinical microbiology 55 (4), 1104-1115, 2017 | 26 | 2017 |
| Toward a global virus genomic surveillance network V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza, CVF Carrington, ... Cell host & microbe 31 (6), 861-873, 2023 | 21 | 2023 |
| Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism C Chaguza, M Yang, JE Cornick, M Du Plessis, RA Gladstone, ... Communications biology 3 (1), 559, 2020 | 20 | 2020 |
| Rotavirus genotypes in hospitalized children with acute gastroenteritis before and after rotavirus vaccine introduction in Blantyre, Malawi, 1997–2019 C Mhango, JJ Mandolo, E Chinyama, R Wachepa, O Kanjerwa, ... The Journal of Infectious Diseases 225 (12), 2127-2136, 2022 | 18 | 2022 |
| Understanding pneumococcal serotype 1 biology through population genomic analysis C Chaguza, JE Cornick, SR Harris, CP Andam, L Bricio-Moreno, M Yang, ... BMC Infectious Diseases 16 (649), 2016 | 18 | 2016 |
| Prophage-encoded immune evasion factors are critical for Staphylococcus aureus host infection, switching, and adaptation C Chaguza, JT Smith, SA Bruce, R Gibson, IW Martin, CP Andam Cell genomics 2 (11), 2022 | 17 | 2022 |
Stephen BentleyWellcome Sanger InstituteVerified email at sanger.ac.uk
